Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55170 203 / 6e-65 unknown protein AT3G14750 117 / 2e-31 unknown protein AT1G67170 109 / 3e-28 unknown protein AT5G61920 78 / 4e-17 unknown protein AT2G30120 77 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015629 [exp] 411 / 6e-147 AT1G55170 236 / 2e-77 unknown protein Lus10037647 [exp] 401 / 5e-143 AT1G55170 233 / 6e-76 unknown protein Lus10038143 [exp] 135 / 4e-38 AT3G14750 275 / 1e-91 unknown protein Lus10013698 [exp] 133 / 3e-37 AT3G14750 298 / 3e-100 unknown protein Lus10035371 [exp] 128 / 7e-36 AT1G67170 284 / 2e-95 unknown protein Lus10005563 [exp] 128 / 2e-35 AT3G14750 288 / 2e-96 unknown protein Lus10030976 [exp] 128 / 2e-34 AT1G67170 294 / 1e-96 unknown protein Lus10034321 [exp] 114 / 5e-30 AT1G55170 89 / 3e-20 unknown protein Lus10041450 [exp] 108 / 1e-28 AT1G55170 84 / 4e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037900 [exp] 259 / 4e-87 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 131 / 1e-36 AT3G14750 297 / 6e-100 unknown protein Potri.017G109700 [exp] 123 / 1e-32 AT1G67170 282 / 3e-91 unknown protein Potri.006G178100 [exp] 114 / 3e-30 AT5G61920 155 / 3e-46 unknown protein Potri.001G281400 [exp] 109 / 1e-28 AT2G30120 161 / 4e-48 unknown protein Potri.009G076700 [exp] 109 / 2e-28 AT3G14750 173 / 8e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015628 pacid=23147198 polypeptide=Lus10015628 locus=Lus10015628.g ID=Lus10015628.BGIv1.0 annot-version=v1.0 ATGGCGGGGAGGAATCGGATCCCTCGTGAAGTGTACGGTGATCATCGCCATGGGTTCCCTCCTGATAGACACCACATCCGTGGGCATCCTATGCCGCACC GTCCTCCACCTCCTCATCCTGCTTTGCTGGAGGAGGAGATTGAACGGCAGCATGTTCATATGCGGAGGCTATCGGGGGAGAATCGGAGGCTGGTTGAGGA TAGAATTGCTCTGCAGCAGGACCTTGGTGCTGCAAAGGAGGAGCTTCACCGTATGAATATAGTGATTAGTGATATCCGTAACGAACAGGAGATGCGGTCT AGGGAGCTTATTGAAAAAGGGATGAAGCTGGAGGCTGATCTCCGGGCGACGGAGCCTTTGAAGGGCGAAGCTCTTCAATTGCGAGCGGAAGTGAAGAGGC TTAAGGACGCGAAGCAGGAGCTTGTTGCGCAGGTTCAGAGCTTGAAGAAAGATCTGGAGAGAGCTCAAGTTGAGAATAAGCAGGTTCCTGGGTTGAAGAG GGAGATTGAGGGGTTGCATAAGGACCTTATGCATGCAAGAGGTGCTATTGAATATGAAAAGCAGGCGAATGTTGAATTGATAGAGCAGCGACAAGGATTG GAGAGAAACATGGTTTCTATGGCACGGGAAGTCGAGAAGCTGCGTGCAGAACGTGTCAGTGCTACTAATCCTCGGTCGTGGGATACTGGTATATCATTCA CTGTACCTTTGTGA
AA sequence Show only first row Show all	>Lus10015628 pacid=23147198 polypeptide=Lus10015628 locus=Lus10015628.g ID=Lus10015628.BGIv1.0 annot-version=v1.0 MAGRNRIPREVYGDHRHGFPPDRHHIRGHPMPHRPPPPHPALLEEEIERQHVHMRRLSGENRRLVEDRIALQQDLGAAKEELHRMNIVISDIRNEQEMRS RELIEKGMKLEADLRATEPLKGEALQLRAEVKRLKDAKQELVAQVQSLKKDLERAQVENKQVPGLKREIEGLHKDLMHARGAIEYEKQANVELIEQRQGL ERNMVSMAREVEKLRAERVSATNPRSWDTGISFTVPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55170			unknown protein		Lus10015628 [exp]	0	1
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10003670 [exp]	40.4	0.5911
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	44.0	0.5714
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	81.0	0.5578
AT1G76360			Protein kinase superfamily pro...		Lus10016020 [exp]	91.7	0.5082
AT5G27260			unknown protein		Lus10006034 [exp]	101.6	0.5208
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	121.2	0.5395
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	139.7	0.5284

Compare expression of checked genes

Lus10015628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.