Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55170 228 / 6e-74 unknown protein AT3G14750 121 / 4e-32 unknown protein AT1G67170 116 / 3e-30 unknown protein AT5G61920 78 / 8e-17 unknown protein AT2G30120 79 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037647 [exp] 512 / 0 AT1G55170 233 / 6e-76 unknown protein Lus10015628 [exp] 411 / 8e-147 AT1G55170 211 / 3e-68 unknown protein Lus10013698 [exp] 144 / 7e-41 AT3G14750 298 / 3e-100 unknown protein Lus10038143 [exp] 140 / 9e-40 AT3G14750 275 / 1e-91 unknown protein Lus10005563 [exp] 137 / 3e-38 AT3G14750 288 / 2e-96 unknown protein Lus10035371 [exp] 133 / 3e-37 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 134 / 2e-36 AT1G67170 294 / 1e-96 unknown protein Lus10034321 [exp] 117 / 2e-30 AT1G55170 89 / 3e-20 unknown protein Lus10041450 [exp] 112 / 3e-29 AT1G55170 84 / 4e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037900 [exp] 318 / 2e-109 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 149 / 9e-43 AT3G14750 297 / 6e-100 unknown protein Potri.017G109700 [exp] 129 / 6e-34 AT1G67170 282 / 3e-91 unknown protein Potri.006G178100 [exp] 121 / 2e-32 AT5G61920 155 / 3e-46 unknown protein Potri.009G076700 [exp] 119 / 2e-31 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 117 / 3e-31 AT2G30120 161 / 4e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015629 pacid=23147209 polypeptide=Lus10015629 locus=Lus10015629.g ID=Lus10015629.BGIv1.0 annot-version=v1.0 ATGGCGGGGAGGAATCGGATCCCTCGTGAAGTGTACGGTGATCATCGCCATGGGTTCCCTCCTGATAGACACCACATCCGTGGGCATCCTATGCCGCACC GTCCTCCACCTCCTCATCCTGCTTTGCTGGAGGAGGAGATCGAACGGCAGCATGTTCATATGCGGAGGCTATCGGGGGAGAATCGGAGGCTGGTTGAGGA TAGAATTGCTCTGCAGCAGGACCTTGGTGCTGCAAAGGAGGAGCTTCACCGTATGAATATAGTGATTAGTGATATCCGTAACGAACAGGAGATGCGGTCT AGGGAGCTTATTGAAAAAGGGATGAAGCTGGAGGCTGATCTCCGGGCGACGGAGCCTTTGAAGGGCGAAGCTCTTCAATTGCGAGCGGAAGTGAAGAGGC TTAAGGACGCGAAGCAGGAGCTTGTTGCGCAGGTTCAGAGCTTGAAGAAAGATCTGGAGAGAGCTCAAGTTGAGAATAAGCAGGTTCCTGGGTTGAAGAG GGAGATTGAGGGGTTGCATAAGGACCTTATGCATGCAAGAGGTGCTATTGAGTATGAAAAGCAGGCGAATGTTGAATTGATAGAGCAGCGACAAGGATTG GAGAGAAACATGGTTTCCATGGCACGGGAAGTCGAGAAGCTGCGTGCAGAACGTGTCAGTGCAACTAATCCTCGGTCGTGGGATACTGGCGGACCATATG AACTGAAGTATGGCAACCCCGAGGGGGCTTTACCTGCTGTATATGGACATGGATATGCAACTTATATGATGGATTCGGCTGCTAGTGACGAAGGCCCTTC ATATGGAAGTGGTTCAGCTTCATGGGAGAAACATCGTATGTCACGCCGCTGA
AA sequence Show only first row Show all	>Lus10015629 pacid=23147209 polypeptide=Lus10015629 locus=Lus10015629.g ID=Lus10015629.BGIv1.0 annot-version=v1.0 MAGRNRIPREVYGDHRHGFPPDRHHIRGHPMPHRPPPPHPALLEEEIERQHVHMRRLSGENRRLVEDRIALQQDLGAAKEELHRMNIVISDIRNEQEMRS RELIEKGMKLEADLRATEPLKGEALQLRAEVKRLKDAKQELVAQVQSLKKDLERAQVENKQVPGLKREIEGLHKDLMHARGAIEYEKQANVELIEQRQGL ERNMVSMAREVEKLRAERVSATNPRSWDTGGPYELKYGNPEGALPAVYGHGYATYMMDSAASDEGPSYGSGSASWEKHRMSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55170			unknown protein		Lus10015629 [exp]	0	1
AT5G57710			Double Clp-N motif-containing ...		Lus10023201 [exp]	40.7	0.7992
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	44.6	0.8191
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019015 [exp]	102.8	0.8078
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008167 [exp]	107.5	0.7819
AT2G28060			5'-AMP-activated protein kinas...		Lus10003355 [exp]	125.1	0.7919
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	148.1	0.7960
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	160.2	0.7968
AT1G34300			lectin protein kinase family p...		Lus10028711 [exp]	160.2	0.7821
AT2G45590			Protein kinase superfamily pro...		Lus10031678 [exp]	167.3	0.7899
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	216.3	0.7698

Compare expression of checked genes

Lus10015629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.