Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 372 / 1e-130 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 357 / 8e-125 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 270 / 4e-91 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037650 [exp] 542 / 0 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10001479 [exp] 407 / 2e-144 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008479 [exp] 405 / 1e-143 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 315 / 6e-109 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037652 [exp] 268 / 3e-90 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 257 / 4e-86 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10032691 [exp] 56 / 2e-08 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 390 / 5e-138 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.003G034600 [exp] 389 / 1e-137 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.018G054800 [exp] 298 / 2e-101 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Lus10015632 pacid=23147244 polypeptide=Lus10015632 locus=Lus10015632.g ID=Lus10015632.BGIv1.0 annot-version=v1.0 ATGGCCGGGAACAAGATTGTAGCGGTTTTCGACTTCGACAAGACGATAATTGATGTTGACAGCGACAACTGGGTGATCGACGAACTGGGTTTCAACGATC TCTACAATCAGCTCCTCCCCACCATGCCTTGGAACTCCCTCATGGATAGGATGATGAAAGAGATCCACGAACATGGGAAGACAGTGGACGAGATTGTTGA AGCTCTTAAGCGGATTCCAATAGATCCGAGGATCGTTTCTGCGATCGAATCGGCTCATGGGTTGGGGTGCGAGCTGAGGATCGTGAGCGATGCGAATGTG TTCTTCATCGAGACGATTCTGGAGCGCCTTGGGCTGAGGAAATACTTCTCTGAGATTAATACGAATCCTGGGTTTGTAGATGAACAAGAAGGGAGGTTGA AGATTTCTCCTTACCATGATTCTGAGCAGTCTCCCCATGGATGTAGTCTCTGCCCTCCAAATATGTGCAAGGGTATGATAATCGAAAAGATGAAGGCCGC CATAGCCAGAGAAGAAGGAGGAAGCATTAACAAAATCAAGATGATCTATCTCGGAGACGGGGCAGGGGACTACTGCCCGAGCCTGAAACTATCAGAAACA GACTACGTGATGCCGAGGAAGAACTTCCCCGTCTGGGACCTCATCAGCAAGAACCCGATGCTGCTCAAGGCTGAGATCCATGAATGGAGCAATGGAGGCG AGCTCGAGGACGTTCTTCTTCGAATTGTTCGGACCGTTTGTGATCGTGATCATGATAAGTTGTTTGATGCTCTAAGTAATAGTGAGTGTTGCAAGTTCCA GAATATTGCTGCTGCTCCATTAATTCCTCAGCAGCCTCTCTCAGTCCCTCGGTAG
AA sequence Show only first row Show all	>Lus10015632 pacid=23147244 polypeptide=Lus10015632 locus=Lus10015632.g ID=Lus10015632.BGIv1.0 annot-version=v1.0 MAGNKIVAVFDFDKTIIDVDSDNWVIDELGFNDLYNQLLPTMPWNSLMDRMMKEIHEHGKTVDEIVEALKRIPIDPRIVSAIESAHGLGCELRIVSDANV FFIETILERLGLRKYFSEINTNPGFVDEQEGRLKISPYHDSEQSPHGCSLCPPNMCKGMIIEKMKAAIAREEGGSINKIKMIYLGDGAGDYCPSLKLSET DYVMPRKNFPVWDLISKNPMLLKAEIHEWSNGGELEDVLLRIVRTVCDRDHDKLFDALSNSECCKFQNIAAAPLIPQQPLSVPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	1.0	0.9290
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	2.0	0.8961
AT5G13740		ZIF1	zinc induced facilitator 1 (.1...		Lus10035765 [exp]	2.2	0.8240
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	5.7	0.8281
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	6.9	0.8430
AT2G16050			Cysteine/Histidine-rich C1 dom...		Lus10017477 [exp]	11.3	0.8055
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	11.4	0.7976
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	13.3	0.7900
AT5G62960			unknown protein		Lus10027692 [exp]	15.9	0.7962
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10007877 [exp]	16.1	0.8082

Compare expression of checked genes

Lus10015632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.