Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37470 166 / 7e-52 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 132 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 94 / 8e-24 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037651 [exp] 211 / 8e-70 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 186 / 1e-59 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 185 / 1e-59 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 180 / 2e-57 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 127 / 1e-36 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 89 / 4e-22 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 89 / 7e-22 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 86 / 9e-21 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 83 / 9e-20 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145000 [exp] 172 / 2e-54 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 162 / 1e-50 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 125 / 6e-36 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 120 / 3e-34 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 103 / 1e-27 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 96 / 1e-24 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 40 / 0.0003 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10015633 pacid=23147232 polypeptide=Lus10015633 locus=Lus10015633.g ID=Lus10015633.BGIv1.0 annot-version=v1.0 ATGGCATCACTACGAGAAGCTCACAACGTCAAGGTGGTGGGCTCCGGCGACCGGGTCATCGTCTTAGCTCACGGGTTCGGCACCGACCAGTCCGTCTGGA AGCACCTCCTCCCTCACTTGCTCGCCGACGACGAATTCACGGTCGTCGTTTACGACAACATGGGGGCCGGCACCACCAACCCCGATTTCTTCGACTTCGA ACGCTACTCCGGCCTCGAAGCCTATGCTGCCGATCTCCTCGCCATCCTCGACGATCTCCACGTCGAATCGTGCATCTATGTCGGCCACTCGGTATCCGCC ATGATCGGCGTTGTCGCCTCCATCGGTCACCCTCAACTCTTCCTCAAACTCATCCTCCTCGCTGGCTCCCCAAGGTTTGGGATTCAATTTTACGCTCCAA TTAATATAAATGAATTTCATCCATTTTTAAAGTATCCATTTTGA
AA sequence Show only first row Show all	>Lus10015633 pacid=23147232 polypeptide=Lus10015633 locus=Lus10015633.g ID=Lus10015633.BGIv1.0 annot-version=v1.0 MASLREAHNVKVVGSGDRVIVLAHGFGTDQSVWKHLLPHLLADDEFTVVVYDNMGAGTTNPDFFDFERYSGLEAYAADLLAILDDLHVESCIYVGHSVSA MIGVVASIGHPQLFLKLILLAGSPRFGIQFYAPININEFHPFLKYPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10015633 [exp]	0	1
					Lus10003479 [exp]	4.0	0.8861
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	5.7	0.9188
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	11.1	0.8614
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10024830 [exp]	11.7	0.8360
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10000054 [exp]	12.1	0.9114
AT5G40690			unknown protein		Lus10015261 [exp]	26.5	0.8870
					Lus10024012 [exp]	32.6	0.8134
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10029367 [exp]	34.7	0.8904
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	40.0	0.8649
AT1G21000			PLATZ transcription factor fam...		Lus10040292 [exp]	41.4	0.8934

Compare expression of checked genes

Lus10015633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.