Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 301 / 3e-103 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 299 / 2e-102 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 229 / 1e-75 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037652 [exp] 379 / 9e-135 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10001479 [exp] 330 / 8e-115 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008479 [exp] 327 / 1e-113 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 315 / 5e-109 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 308 / 4e-106 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 219 / 8e-72 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10032691 [exp] 50 / 5e-07 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 333 / 3e-116 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.003G034600 [exp] 320 / 9e-111 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.018G054800 [exp] 269 / 7e-91 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Lus10015634 pacid=23147197 polypeptide=Lus10015634 locus=Lus10015634.g ID=Lus10015634.BGIv1.0 annot-version=v1.0 ATGTCGTCCGGAGGAGTGGTAGTACTCTACGACTTCGACGAGACAATCGTAGGAGTCGACACCGATTACTGGTTGATCGACGAATTCGGTTACACACATT TGGCCGACCAACTCCGCCCCAATACGCCTTGGAACTCTATCATTGATATGATGCTGAAAGAGATACAAAAACATGGGAGAACCATTGATGACATTGTTGG AGCTTTGGAAAGAATTCCAATCCTTCCTAGGGTTGTTTCCTCCATCAAATCTGCTTATGATTTGGGGTGCGAGCTGAGGATCGTAAGTGATTCGAACGTG TTCTTCATCGAACAAGTGTTGGAGAACCTTGGAGTGAGGAGATTTTTCTCAGAGATCAACACAAATTCAGGGTTTGTTGATGATGAAGGGAGGTTGAGGG TTGCTCCTTACCATGATTTCACCAAGGCTTCACATGGTTGTACCCTTTGCCCTCCAAACATGTGCAAGGGGTTGATAGTGGAGAGAATCCAAGCATCCAT AGCAAAAAACAACAGCAAGAGGATCATCTACGTGGGAGATGGAATTGGGGATTACTGCCCAAGCTTGAAGCTCAAGGAAACTGATTTCCTGTTGCCCAGG AAGAACTTCAAATTGTGGGATTTGATCAACAATAATAAGAACCCACTTCATAAAATAATCAAGGCTCAGATCCATGAATGGGGTGATGGAGATGAGCTCG ACATTGCTGACATCGTTCAGAAAGTTAGTTAA
AA sequence Show only first row Show all	>Lus10015634 pacid=23147197 polypeptide=Lus10015634 locus=Lus10015634.g ID=Lus10015634.BGIv1.0 annot-version=v1.0 MSSGGVVVLYDFDETIVGVDTDYWLIDEFGYTHLADQLRPNTPWNSIIDMMLKEIQKHGRTIDDIVGALERIPILPRVVSSIKSAYDLGCELRIVSDSNV FFIEQVLENLGVRRFFSEINTNSGFVDDEGRLRVAPYHDFTKASHGCTLCPPNMCKGLIVERIQASIAKNNSKRIIYVGDGIGDYCPSLKLKETDFLLPR KNFKLWDLINNNKNPLHKIIKAQIHEWGDGDELDIADIVQKVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	0	1
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	2.6	0.9369
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	3.0	0.9603
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	7.3	0.9468
AT1G06980			unknown protein		Lus10026407 [exp]	9.2	0.9399
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	9.6	0.9171
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	9.8	0.9379
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031855 [exp]	11.0	0.9319
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	11.6	0.9465
AT4G39700			Heavy metal transport/detoxifi...		Lus10016436 [exp]	12.2	0.8766
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	14.7	0.8917

Compare expression of checked genes

Lus10015634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.