Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 822 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 784 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037653 [exp] 967 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012083 [exp] 685 / 0 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10001239 [exp] 532 / 0 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 525 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 490 / 1e-170 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197300 [exp] 848 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 835 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.006G231000 [exp] 826 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 825 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.015G079300 [exp] 560 / 0 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10015635 pacid=23147273 polypeptide=Lus10015635 locus=Lus10015635.g ID=Lus10015635.BGIv1.0 annot-version=v1.0 ATGAACGGTGGCGATGAGGTCACGGCAGCAGCTCCGGCGAGCCCACCTCTCGAGTGGAAATTCTCTCAGGTCTTCGGCGAGCCAACTGCCGGAGAGGAAT TGCAGGAAGTAGACATAATTTCAGCTATTGAATTTGATAAAACCGGGGATCATCTTGCTACTGGGGATCGCGGAGGACGTGTGGTCCTCTTTGAGAGGAC AGATACCAAGGATCATGGTGGATCAAGGAGAGATTTGGAAAGGATGGATTTCCCTATTAGCAGGCATCCCGAGTTCCGTTACAAAACAGAATTTCAGAGC CACGAACCTGAGTTTGACTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAACAAAATCAGATGGTGTCAAGCAGCTAATGGTGCTCTTTTTCTTCTAT CTACAAATGACAAGACAATTAAGTTTTGGAAGGTCCAAGAAAAGAAGGTCAAGAAGATTTCTGAGATGAATGTGGAACCTTCAAAAGCTGTAGGAAATGG CAGTGTTGCTAGTTCAAGTAATTCAAGTACTGCTAAGCCATATCTAGCAAATGGTAGTTCCACAGAGAGGCTGCAGAACTCTCTGAGCAATGATTTCAAC ATCCCAGCTGGAGGCTTCCCATCACTGCGTTTGCCAGTGGTTACAAGCGCTGAGACGAGTCTGGTGGCAAGATGTCGTAGGGTCTATGCCCATGCTCATG ATTATCACATTAATTCCATTTCAAGCAATAGTGATGGTGAGACCTTTATATCGGCTGATGATCTGCGAATAAATCTTTGGAACTTGGAAATTAGCAACCA AAGTTTCAATATTGTCGATGTCAAACCTGCAAATATGGAGGATCTAACTGAGGTTATAACTTCAGCCGAGTTCCATCCCAATCAATGTAACATGTTAGCT TATAGCAGCTCAAAAGGCTCAATCAGACTAATTGATTTGCGACAATCAGCTCTCTGTGACTCTCATGCTAAACTGTTCGAAGAACAGGAGGCTCCTGGCT CTAGGTCATTCTTCACAGAGATAATTGCTTCAATCTCTGATATTAAATTTGCAAAAGACGGACGATATCTACTTAGTCGCGACTATATGACACTGAAGTT GTGGGATATCAATATGGATTCTGGCCCAGTTTCAACCTTCCAGGTTCACGAACATTTAAGACCCAAGCTCTGTGATCTATATGAAAACGATTCCATCTTC GACAAATTCGAGTGTTGTTTAAGTGGAGATGGCTCCCGTGTAGCTACAGGATCATATAGCAATCTATTCCGTGTGTTCGGTTGCTCCACTGGAAGCAGCG AGGCAAAACCTTTGGAAGCCAGTAAAAATCCTATGAGGAGACAAGTTCAGACTCCTGCAAGGCCCTCAAGATCCCTCACAACGTTAACCCGTGTTGTACG ACGCGGATCCGATAACCAAGGAGTCGATGCAAACGGGAACTCGTTCGACTCTGCTACAAAGTTGCTGCACCTAGCATGGCACCCTACTGAAAACTCGATC GCATGCGCTGCTGCAAACAGCTTGTACATGTATTATGCATAA
AA sequence Show only first row Show all	>Lus10015635 pacid=23147273 polypeptide=Lus10015635 locus=Lus10015635.g ID=Lus10015635.BGIv1.0 annot-version=v1.0 MNGGDEVTAAAPASPPLEWKFSQVFGEPTAGEELQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDFPISRHPEFRYKTEFQS HEPEFDYLKSLEIEEKINKIRWCQAANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVEPSKAVGNGSVASSSNSSTAKPYLANGSSTERLQNSLSNDFN IPAGGFPSLRLPVVTSAETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNQCNMLA YSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYLLSRDYMTLKLWDINMDSGPVSTFQVHEHLRPKLCDLYENDSIF DKFECCLSGDGSRVATGSYSNLFRVFGCSTGSSEAKPLEASKNPMRRQVQTPARPSRSLTTLTRVVRRGSDNQGVDANGNSFDSATKLLHLAWHPTENSI ACAAANSLYMYYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	1.0	0.8014
AT5G59830			unknown protein		Lus10024426 [exp]	2.4	0.7965
AT1G77680			Ribonuclease II/R family prote...		Lus10009879 [exp]	4.0	0.7311
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	4.0	0.7788
AT5G38880			unknown protein		Lus10034622 [exp]	9.4	0.7214
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	12.7	0.7727
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	14.5	0.7496
AT5G58100			unknown protein		Lus10008552 [exp]	17.2	0.7591
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	17.3	0.7452
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	17.7	0.7580

Compare expression of checked genes

Lus10015635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.