Plant FIBer expression Database

Lus10015638 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14010 201 / 4e-57 CID4 CTC-interacting domain 4 (.1.2.3.4)
AT1G54170 184 / 3e-51 CID3 CTC-interacting domain 3 (.1)
AT5G54920 65 / 5e-11 unknown protein
AT4G26990 61 / 1e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037656
[exp]
632 / 0 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4)
Lus10040755
[exp]
69 / 4e-12 AT5G54920 269 / 6e-84 unknown protein
Lus10016477
[exp]
67 / 2e-11 AT5G54920 271 / 5e-85 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G171100
[exp]
409 / 3e-136 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4)
Potri.003G063000
[exp]
382 / 1e-125 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
Potri.011G138600
[exp]
79 / 3e-15 AT5G54920 148 / 1e-38 unknown protein
Potri.001G423200
[exp]
78 / 6e-15 AT5G54920 253 / 3e-77 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07145 PAM2 Ataxin-2 C-terminal region
Representative CDS sequence
>Lus10015638 pacid=23147187 polypeptide=Lus10015638 locus=Lus10015638.g ID=Lus10015638.BGIv1.0 annot-version=v1.0
ATGAGTATTCAACAGTCTGTGCAGCCCAAGTCTTCTGTCAATGGTTTTAATCGTCGAAGGACTGACAGGGAAGGAGGAATGAGATTGGACAATAAACCTC
AATCAGGAAAATTCAGTCAGGATAGATCATTCAATGCAACAGGGACAGGCAGAACTCAAGTTTACGAGAGTCCTTCTCGTGACAGGCTGGTCTACCTGTC
AACCTGCCTTATTGGGCTGCCTGTGGACGTCCAGCTAAAAGATGGATCCATGTACTCTGGAACATGTTACACCACAAATGTTGAGAAGGAATTTGCCATT
GTTTTGAAAATGGCTCGCTTGACAAAGGATGTGTCTCATCGAGGGGGTAAGGCAGCATATGTTAGCAAAGCTCCTTCAAAGACTTTAATTATACCTGGAA
AAGATGTTGCGCAAGTTATAGCTAAGGATGTCCCTGTAACTGTTGATGGACTCTCCAATGAGCTTCAAAGTGAAAGACATCGGGATATTTTGATTGATTC
GACCATATCGAGGTCCCATCATGTCGATGCAGAGAGAGAGCTGGAACCTTGGGTACCTGATGGAGATGATCTGCAATGCCCTGAACTCGAGAACATATTT
GATGGCTCTTGGAATAGGAAAATTATAACTGAACTGAGAAGGGAAAGGGGACTCAACGTTGGTGACCATTTCGATATTGATGAGGAGACTAGGTTCTCAT
CAGTATACAGAGGCACGGGGGTTGATGATAGTGGATATGATGAAGAGGAGGATATATTGTTAGACAAACAGAATACTGAAACATTCGGGGATGTATCTGG
ATCGTTCACTGCAAATGATCTGACCCGTGGTAAAAGCAATGACACTGCCGGAGTATTATCAACCTCTTCAGTGGATGAACCACAATGCTCTCAATCAAGT
ACTGGCTCAGATGTGCATCAGTCCAATGCTTATGACCTTTCTAGACAAGCTGCAGATGAAGTTCCTTCTAAAATTTCCAGTTTGGAAACTGATGGAAGGA
ATGCAGATGTTCTGCTAGTTGCTCATGCCGATGATAGCATTAAAGATCGCGTGGAGGAAAAAAAGGTAGCTCCAGATGCCAAGTTTTCCAAGTCTGGAGA
ATCTCGATCTTCAGAGAGCAGCCAGAGTGCTTCTGCTTATCCACCCTCGTTAAAAAGCCATGAAAAGGAAATATCGTCTACTGCTCCAGCTTCTAGTCAT
CCTGCTTTATCTCCAAGCTCATCAGTTGGTTCTTTATCTTCTGAAAAGTCAACACTGAACCCGAATGCAAAGGAATTTAAATTGAATCCCAAAGCAAAGA
GTTTCAGCCCATTGCAGTCATCACCACTTCGGCCTCCATCGCCAGTTCCCGATAGTTCCCTCTACTTCCCAACCAATGTTACCACTGCACCACAAATGCA
TGGGATGCCAATGGGCTTTGGTATGAGGCCATCATTCAGTGGGCATCAGCCTGTTATGTATAATCCACAAGTAGCATCGATGCAGCCACCTCAAGGCTAT
TTCCATCCTAATGGGCCTCAGTATGGTCAGCAAATGCTTCTTGGCCATCCTAGACAAGTGTTGTACATGCCAAGCTACCAACCTGAGACGCCCTACAAAG
GACGTGAATTTTAG
AA sequence
>Lus10015638 pacid=23147187 polypeptide=Lus10015638 locus=Lus10015638.g ID=Lus10015638.BGIv1.0 annot-version=v1.0
MSIQQSVQPKSSVNGFNRRRTDREGGMRLDNKPQSGKFSQDRSFNATGTGRTQVYESPSRDRLVYLSTCLIGLPVDVQLKDGSMYSGTCYTTNVEKEFAI
VLKMARLTKDVSHRGGKAAYVSKAPSKTLIIPGKDVAQVIAKDVPVTVDGLSNELQSERHRDILIDSTISRSHHVDAERELEPWVPDGDDLQCPELENIF
DGSWNRKIITELRRERGLNVGDHFDIDEETRFSSVYRGTGVDDSGYDEEEDILLDKQNTETFGDVSGSFTANDLTRGKSNDTAGVLSTSSVDEPQCSQSS
TGSDVHQSNAYDLSRQAADEVPSKISSLETDGRNADVLLVAHADDSIKDRVEEKKVAPDAKFSKSGESRSSESSQSASAYPPSLKSHEKEISSTAPASSH
PALSPSSSVGSLSSEKSTLNPNAKEFKLNPKAKSFSPLQSSPLRPPSPVPDSSLYFPTNVTTAPQMHGMPMGFGMRPSFSGHQPVMYNPQVASMQPPQGY
FHPNGPQYGQQMLLGHPRQVLYMPSYQPETPYKGREF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Lus10015638
[exp]
0 1
AT3G05090 LRS1 LATERAL ROOT STIMULATOR 1, Tra... Lus10001717
[exp]
3.3 0.9168
AT1G17500 ATPase E1-E2 type family prote... Lus10008473
[exp]
5.7 0.8531
AT5G61140 U5 small nuclear ribonucleopro... Lus10040524
[exp]
6.5 0.9028
AT3G08850 ATRAPTOR1B, RAP... HEAT repeat ;WD domain, G-beta... Lus10009083
[exp]
6.9 0.9044
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Lus10037656
[exp]
8.0 0.8987
AT3G46960 RNA helicase, ATP-dependent, S... Lus10002528
[exp]
9.5 0.8778
AT4G33650 APEM1, DRP3A, A... ABERRANT PEROXISOME MORPHOLOGY... Lus10027906
[exp]
10.0 0.8645
AT3G55320 ABCB20, PGP20 ATP-binding cassette B20, P-gl... Lus10023437
[exp]
10.5 0.8819
AT3G19190 ATATG2 autophagy 2 (.1) Lus10019868
[exp]
11.5 0.8907
AT5G15680 ARM repeat superfamily protein... Lus10035141
[exp]
12.4 0.8754

Lus10015638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.