Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13640 1046 / 0 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 787 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT1G04010 88 / 6e-18 ATPSAT1 phospholipid sterol acyl transferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037657 [exp] 1249 / 0 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 1006 / 0 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 1004 / 0 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 825 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043360 [exp] 504 / 5e-174 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10043361 [exp] 82 / 2e-18 AT5G13640 85 / 4e-20 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10008234 [exp] 85 / 7e-17 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 84 / 2e-16 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 82 / 5e-16 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063100 [exp] 1101 / 0 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 1084 / 0 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 830 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.009G150800 [exp] 219 / 2e-67 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1) Potri.014G195500 [exp] 86 / 2e-17 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.015G121000 [exp] 52 / 1e-06 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 48 / 2e-05 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 48 / 2e-05 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015639 pacid=23147242 polypeptide=Lus10015639 locus=Lus10015639.g ID=Lus10015639.BGIv1.0 annot-version=v1.0 ATGCCGGTAGTTCGCCGGCGAAAACCTTCCGAAACCGACAAGCCATCCACGTCGGCGCCTTCGGATGACGACATAAGCGGGGGAGGAACAACGACGGGGA AAGAGGAGGAAGGAGAAGACAGTAAGAGGAAGAACAAGAAGAGGCGGAAGAAGAAGCCAGCTGCTGCCGATAAGCCTCCGCTACCCCCTGCTCCTTCTCC TGCGGGAGGAGGAAACGACGACGGCGGAAAAGAAGAAGAGGGGGATGAAAAAAAAGGAAGGCGCAGGAGGAGAAAGGCGTCGGCGACGAAATGGTCGTGC GTGGACAGCTGCTGCTGGTTCGTCGGCTGCGTTTGTTTGACCTGGTGGGTGCTGCTGTTTCTATACAATGCTATGCCTGCTTCATTCCCGCAGTACGTCA CTGAGGCGATCACGGGGCCTTCGCCTGACCCGCCTGGGGTGAAGCTCAAGAAAGAAGGGCTCAGATCGAAGCATCCTGTGGTGTTTGTGCCAGGGATTGT GACGGCTGGTTTGGAATTGTGGGAAGGTCATCATTGTGCCGAAGGTTTGTTCCGGAAGCGGCTTTGGGGTGGGACTTTTGGCGAGGTTTATAAGAGGCCT TTGTGCTGGGTAGAGCACATGTCGTTAGATAATGAAACTGGATTAGATCCTCCCGGTATAAGGCTCAGGCCAGTATCTGGACTTGTAGCTGCTGATTACT TCGCTCCTGGATATTTTGTGTGGGCGGTTCTTATAGCCAACTTGGCGCGAATTGGTTATGAGGAGAATTCAATGTACATGGCCTCCTATGATTGGAGACT TTCATTTCAGAACACAGAGGTTCGTGACAGAACGTTAAGCCGCATCAAGAGTAACATAGAATTGATGGTTGCCACCAATGGTGGGCATAAGGCAGTCATT ATTCCACACTCTATGGGAGTCTTGTACTTTTTGCACTTCATGAAGTGGGTCGAGGCACCAGCTCCAATGGGAGGCGGAGGTGGACCTGATTGGTGCTCTA AGCATATCAAGGCAGTGATGAATATTGGTGGCCCATTTTTAGGTGTTCCGAAAGCTGTTACTGGGCTTTTCTCTGCTGAAGCAAGGGATATTGCCGTTGT CAGGGCTCTCACTCCAGGATTCTTGGACAATGATATATTCCGTCTCCAGACATTACAGCATATAATGAGAATGTCTCGTACATGGGACTCAACCATGTCT ATGATACCTAAAGGTGGAGATACTATTTGGGGCGATCTGGATTGGTCCCCCGAGGATGGCTGCTCTCCTAGTAAAAGAGGGCGGGGAAACAATGGAACTC AGAGTGACGATAACCTCGCTCAGACTACTAAAGTTCGCTATGGGAGGATTATATCGTTCGGGAAGGACGTAGCAGAGGCACCTTCATCAGAGATTGACAG GATAGATTTTAGGGACGCTATTAAAGGTCAAAATGTTGCAAACACTAGCTGCCGGGACGTTTGGACAGAGTACCATGACATGGGACTTGGAGGTATTAAA GCTGTAGCAGAATACAAGTCATACACTGCTGGATCCATCGTGGACCTGCTTAGTTATGTTGCCCCGAAAATGATGGATCGTGGAAGCTGTCATTTCTCTT ATGGAATTGCTGATGACCTTGATGATCCCAAGTACAACCATTTCAAATACTGGTCAAACCCCTTGGAAACAAAGTTACCCAATGCATCAGACATGGAAAT CTTCTCAATGTACGGAGTCGGTATCCCCACGGAACGAGCTTATGTCTACCGGTTATCTCCAGCTGGCGAATGCTACATTCCGTTCCAGATCGATACATCA GCGGACGAAGATAGCTGTCTGAAAGATGGAGTGTACACAGTTGATGGGGACGAAACGGTGCCCGTGTTGAGCGCAGGATACATGTGTGCCAAAGGTTGGA GGGGGAAGACCCGGTTCAATCCTTCCGGAATAAGCACTTACATAAGGGAGTATGATCATTCCCCTCCGGCAAATCTGCTGGAAGGCAGGGGAACCCAGAG TGGCGCCCATGTCGATATAATGGGGAACTTCGCACTGATTGAAGATATACTGAGGGTTGCTGCTGGTGGTACCGGTAAAGATCTTGATGGCGATCGTGTC TATTCCGATATCTTCAAGTGGTCTGAGAGGATCAAGCTGAATCTCTAG
AA sequence Show only first row Show all	>Lus10015639 pacid=23147242 polypeptide=Lus10015639 locus=Lus10015639.g ID=Lus10015639.BGIv1.0 annot-version=v1.0 MPVVRRRKPSETDKPSTSAPSDDDISGGGTTTGKEEEGEDSKRKNKKRRKKKPAAADKPPLPPAPSPAGGGNDDGGKEEEGDEKKGRRRRRKASATKWSC VDSCCWFVGCVCLTWWVLLFLYNAMPASFPQYVTEAITGPSPDPPGVKLKKEGLRSKHPVVFVPGIVTAGLELWEGHHCAEGLFRKRLWGGTFGEVYKRP LCWVEHMSLDNETGLDPPGIRLRPVSGLVAADYFAPGYFVWAVLIANLARIGYEENSMYMASYDWRLSFQNTEVRDRTLSRIKSNIELMVATNGGHKAVI IPHSMGVLYFLHFMKWVEAPAPMGGGGGPDWCSKHIKAVMNIGGPFLGVPKAVTGLFSAEARDIAVVRALTPGFLDNDIFRLQTLQHIMRMSRTWDSTMS MIPKGGDTIWGDLDWSPEDGCSPSKRGRGNNGTQSDDNLAQTTKVRYGRIISFGKDVAEAPSSEIDRIDFRDAIKGQNVANTSCRDVWTEYHDMGLGGIK AVAEYKSYTAGSIVDLLSYVAPKMMDRGSCHFSYGIADDLDDPKYNHFKYWSNPLETKLPNASDMEIFSMYGVGIPTERAYVYRLSPAGECYIPFQIDTS ADEDSCLKDGVYTVDGDETVPVLSAGYMCAKGWRGKTRFNPSGISTYIREYDHSPPANLLEGRGTQSGAHVDIMGNFALIEDILRVAAGGTGKDLDGDRV YSDIFKWSERIKLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	0	1
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10037657 [exp]	2.4	0.7713
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	2.8	0.7863
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10029661 [exp]	9.8	0.7115
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	10.0	0.7573
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	10.1	0.7743
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	13.5	0.7252
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	28.9	0.7090
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	30.3	0.7426
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	31.3	0.7579
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	33.6	0.6993

Compare expression of checked genes

Lus10015639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.