Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13990 492 / 5e-160 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT3G07660 73 / 9e-13 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 68 / 3e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 58 / 3e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 57 / 6e-08 GIP1 GBF-interacting protein 1 (.1) AT1G55820 57 / 7e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 56 / 2e-07 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 55 / 2e-07 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037658 [exp] 1627 / 0 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10036414 [exp] 92 / 1e-18 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 87 / 5e-17 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 73 / 1e-12 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 71 / 6e-12 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004128 [exp] 64 / 6e-10 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10004543 [exp] 63 / 9e-10 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 52 / 4e-08 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 55 / 3e-07 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170700 [exp] 764 / 0 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.003G063300 [exp] 733 / 0 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.002G217000 [exp] 91 / 2e-18 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 91 / 3e-18 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 73 / 9e-13 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 73 / 9e-13 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 71 / 4e-12 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 69 / 1e-11 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 66 / 8e-11 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10015640 pacid=23147195 polypeptide=Lus10015640 locus=Lus10015640.g ID=Lus10015640.BGIv1.0 annot-version=v1.0 ATGGTTGGCTCTGCTGTTGCTTCTTCAAGCAGCGGGGCTCAGTCGCAGCAGCAGCCACTACAGACGCAGAACCTGCCTGCTAAAGTGAGGAAGGCGATAC TGTCGATTAAAGAGATTGTGGGCGACTTCTCCGATAACGATATCTACATGACACTCCAGGAGAGTAATATGGACCCTAATGATGCTGCTCAGAAATTGCT TAATCAAGATCCCTTTCATGAGGTGAAAAGAAGAAAAGATAGGAAGAAAGAGCTTTACTTCGTCTGTAACGTTACTCATCGGTTTATATGCTCATGGCCT CAGAATGCGGGTTATGCGGGTGCTTCAGAGTCCAGAAGAGGTTCTGAGAATTTTAATCAGGGTTACAGGGGTGCTGCAGAGTCAAGAAGAAGTTCTGAGA ATTTTAATCAGGGTTACAGGGGTCCTGCAGATTCCAGAAAAGGTTCTGAGAATTTTAATCAGGGTTACAGGGGTTCTACAGAGTCCAGAAGAGGTTCTGA GAATTTTACTCAAGGTTACAGGGGTCCTGCAGAGTCCAGAAGAGGTTCTGAGAATTTTAATCAGGGTTACAGAGGTGCTGCAGAGCCCAGAAGAGGTTCT GAAGATGTTAATTCAGGTTACAGGGGTGCTGCAGATTCCAGAAGAGGTTTGGAGAACTTTAATCAAGGTGTTCGGACATTTACTGACCGCGGTGCCAGAC GAGGAGGTTATGTACGCCATGTTGCCCCTAGTAATGGGCCGAGTAGAGAGTTTCGTGTTGTGAGAGACAATAGAGTCAATGCAAATACAGCTAAAGAACT CAAGTCTGATTTGTCTCAAAGTTCATCATCCCATGGGCAAGGTGTTACTAATATCAAGGGTTCAGCTGCATACTCAAGCACTGTAAAAGCGCCAGCTGAA AGAGATCCATCTCAGAGTGCTAATGGGCCTATTGATTCTCAAGGTCTTCGACAAAATAGAGATGCTAACATGAGTGGAACTGACAGGAGATCTAATCTCG GTGAGAAACGGGCAGTGACTCCGAATGCATCTTCACGTGAACAAGGAGGAAAACTTAATACTTCTCAAAACCAATCTGCCACTGTCATTGGGGTGTATTC CTCGTCAACAGATCCTGTCCATGTTCCATCACCTGATTCCAGACCATCTGCTCCTGTTGGAGCTATTAAACGTGAAGTTGGTGTTGTAGGAGGTCGCCGT CAAACTTCTGGAAGTCCTGTGATAAATTTGTCTGTACCTAGTTCAGCATTGGCGAAGGAGAGTTCTTTGACAGAGACATTCCAACCTTTTCTTGCAATAC CTAAGAAAGAACAAGCAAGTCAAGCTAATGCAGCTGATTCTACCGTGTCTGATATTCCTGTCAGCAAACCATTTTTGGGCAGCCAATTTAACAGCAGAAC TCATCAGCAAGCTACAGGTCACCAAAAGGCTTCTCAGCATAATAAAGAGTGGAAACCAAAATCAAGCCAAAAGTCTGTTGGCAATGGTCCTGGAGTGATT GGAACACCCAAGAAATCGAGTTCACCTGTTACTGATAGTTCTAAGGACTCAGAACCTGTTGCAGTAGATCTGCATGATAAGCTTTCACTGGTGAACATAA ACGAAAACCAGAACGTGATCATTGCACAACACATCCGAGTACCTGAAACCGATCGATGCAGGCTTACCTTTGGTAGTTTCGGGGTCGACCTTGATTCCAC CAGGAATTTTGCATCTGGAGTTTCAGCAGTTGGATCTACAGAAGAAAACAATAGGGAATCTACTGCAAGTACGACAGTATCTGCTCCAGAGTCTACTGGT GATGACTCTTCTGGTACTAAGCATGACGAAATATCAAACGAGAAATTGAGATACTCTAGTTCAAATTCTCCAGCTTCAGGTGGAGCATCTGAACTTCAGT TGCCTGATAAGTCTCCAAGTCCCCAGAACATGGATAGTTATGCTGATATTGGTTTGGTTCAAGAAAGCAGTCCATCTTATGATCACTCCGAGTCACAGCA GCAGCAAGATCCTCCTGAACTACGAACTTTCCCTGGGTATGATCAGCAAACTGGTTATGACATGTCATACTTTAGACCTTCGCTGGACGAAACAATGAGA GGACAGGGGTTGCATTCTCCACAAGAGTCTATAGCTTCACACACAGCAAACAGCATTCCAGCATCAACAATGCCGTCCGTGCACCAGCAACAGCACCCAC AAATGGCCCAGATGTATCCACAAGTTCACATGCAGCACTATGCCAATATGATGCCATATCGCCAGTTTGTCTCTCCAGTTTACGTACCACAGATGGCCAT GCCTGCCTATTCCAGCAATCACGCATATCCACACCCATCAAACGGCAGCAGTTACGTGCTGATGCCTGGAGGCAGCTCACACCTCAACACTAACGGGTTA AAGTATGGAGTTCAGCAGTTCAAGACAGTTCCCGGTAGCAATCCCTCGGGTTTTGGAAACTATGCAAGCTCAACTGGATACACAATTAACGCTCCCGGCG TTGTTGGGAATGGAACTGGCCTCGACGACTCCTCTCGGATTAAATACAAGGATGGAAACCTCTATGTCCCAAATCCTCAGGCTGAGACGTCGGAAATGTG GGTTCAGAACCAAAGGGAGCTAGCCGGAATGCAATCCGCCCAATACTACCAAATGCAGAGCCAACCCCCACACCCCACTGCCGCGGCTTATCTACCCTCT CACGCCAGCCACCCATCGTTCAATGCTGCCGCTGTGGCACAATCTTCGCACATGCAGTACCCGGGTCTGTACCCTCCGCAGCCAGCCGGGATGGCGAATC CCCACCACTTGGGCTCGGTAATGGGCAGTAACGTCGGAGTTGCCACAGCGGCCGGAGTAGCACCGCCTGGTGCTCAAGTTGGTGGCTACCATCACCAGCA GCAGCCTCAACTGAGTCATCTCAATTGGACCACCAACTTCTGA
AA sequence Show only first row Show all	>Lus10015640 pacid=23147195 polypeptide=Lus10015640 locus=Lus10015640.g ID=Lus10015640.BGIv1.0 annot-version=v1.0 MVGSAVASSSSGAQSQQQPLQTQNLPAKVRKAILSIKEIVGDFSDNDIYMTLQESNMDPNDAAQKLLNQDPFHEVKRRKDRKKELYFVCNVTHRFICSWP QNAGYAGASESRRGSENFNQGYRGAAESRRSSENFNQGYRGPADSRKGSENFNQGYRGSTESRRGSENFTQGYRGPAESRRGSENFNQGYRGAAEPRRGS EDVNSGYRGAADSRRGLENFNQGVRTFTDRGARRGGYVRHVAPSNGPSREFRVVRDNRVNANTAKELKSDLSQSSSSHGQGVTNIKGSAAYSSTVKAPAE RDPSQSANGPIDSQGLRQNRDANMSGTDRRSNLGEKRAVTPNASSREQGGKLNTSQNQSATVIGVYSSSTDPVHVPSPDSRPSAPVGAIKREVGVVGGRR QTSGSPVINLSVPSSALAKESSLTETFQPFLAIPKKEQASQANAADSTVSDIPVSKPFLGSQFNSRTHQQATGHQKASQHNKEWKPKSSQKSVGNGPGVI GTPKKSSSPVTDSSKDSEPVAVDLHDKLSLVNINENQNVIIAQHIRVPETDRCRLTFGSFGVDLDSTRNFASGVSAVGSTEENNRESTASTTVSAPESTG DDSSGTKHDEISNEKLRYSSSNSPASGGASELQLPDKSPSPQNMDSYADIGLVQESSPSYDHSESQQQQDPPELRTFPGYDQQTGYDMSYFRPSLDETMR GQGLHSPQESIASHTANSIPASTMPSVHQQQHPQMAQMYPQVHMQHYANMMPYRQFVSPVYVPQMAMPAYSSNHAYPHPSNGSSYVLMPGGSSHLNTNGL KYGVQQFKTVPGSNPSGFGNYASSTGYTINAPGVVGNGTGLDDSSRIKYKDGNLYVPNPQAETSEMWVQNQRELAGMQSAQYYQMQSQPPHPTAAAYLPS HASHPSFNAAAVAQSSHMQYPGLYPPQPAGMANPHHLGSVMGSNVGVATAAGVAPPGAQVGGYHHQQQPQLSHLNWTTNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	0	1
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	1.0	0.9604
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	4.5	0.9022
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	4.9	0.8996
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	6.6	0.8804
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	8.5	0.8876
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	10.0	0.8835
AT5G48240			unknown protein		Lus10041095 [exp]	11.0	0.8892
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	11.4	0.8938
AT4G04670			Met-10+ like family protein / ...		Lus10002756 [exp]	11.6	0.8647
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	14.8	0.8943

Compare expression of checked genes

Lus10015640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.