Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13980 137 / 1e-37 unknown protein AT1G54200 124 / 1e-32 unknown protein AT3G42800 64 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037659 [exp] 423 / 4e-149 AT3G13980 193 / 9e-59 unknown protein Lus10008457 [exp] 155 / 2e-44 AT3G13980 151 / 1e-42 unknown protein Lus10025011 [exp] 90 / 7e-20 AT3G13980 115 / 1e-28 unknown protein Lus10026463 [exp] 86 / 1e-18 AT1G54200 107 / 7e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063400 [exp] 113 / 3e-28 AT1G54200 173 / 7e-50 unknown protein Potri.001G170500 [exp] 110 / 3e-27 AT1G54200 167 / 2e-47 unknown protein Potri.006G144700 [exp] 105 / 2e-25 AT3G13980 130 / 2e-34 unknown protein Potri.018G065000 [exp] 97 / 1e-22 AT3G42800 139 / 1e-37 unknown protein Potri.018G049900 [exp] 88 / 4e-19 AT1G54200 122 / 5e-31 unknown protein Potri.006G222700 [exp] 82 / 3e-17 AT1G54200 114 / 4e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015641 pacid=23147258 polypeptide=Lus10015641 locus=Lus10015641.g ID=Lus10015641.BGIv1.0 annot-version=v1.0 ATGGAGAGATCATCATCATCATCCTCCATTTCTCACCGACGACATCACCACCATAGCAGAGATAACCCTTCTTTCTCCTCCACTCTCCTCGACTCCATCT ACCGCTCCTTCGACGATCCCTCATCCGCCGCCGTCGCCACCGATCGCCGCCGCAACCCCCGCCCACCAATACGCTGCGTTTCCGACGACAATATTAATAG TACAGCCCGACTCCGCCAAAACGGTGCGTTTCGGCGCAAATCCGTTGGGGCAGAGATTTATTCTAATTCGAGTTCCAGCTCGTCCGACTCGAGTTACGGC ACCGGTCTAACCGGGTTCGAGTCAGCTGACGACTCCAGATCCAATCTGAAACCGATTCGAACCTCCTCCTCCTTCTCCTCCACCGCCGCCGCCCAATTTA GATCTGGTAACTGCATATCTGACGGCGGAGGAGAATTTGTGAAGAAGAAATCGAGATCGTTGAAGAAAATGTACGGAGATCTGAAGAAATCCAAGCATCA GCCGCCGATTTCTCCCGGCGGCCGTCTCGCCAACTTCTTGAACTCTCTGTTCACCGCCGGAAACGTAAAAAAAGCCAAGTTCAGCGGCGGAGGAGACGAA ATCCGGCCTTCTGACTCGTCGAATTGCTCGTCAGCTTCCTCGTTTTCCCGCTCCTGCTTGAGCAAAACTCCGTCCTCCCGCGGCGGCGGGAAGAGATCGG TGAGGTTTTACCCTGTGAACGTAATCGTCGACGAGGAATCCCGACCTTGCGGGAAGAGGAACGTAATGGAGGCGGAGAATGAGGAGCTTAAGCTGCGAGA TGATGACGATGATGACGGGGCGAGCTGTGCCAGCTCGGATTTGTTTGAGCTGGATAATCTTTCGGCGATTGGAGGGATCGAACGGTACAGGGAAGAATTG CCGGTTTACGAGACTACACATCTGAGCGCGAATCATCGGACGGCTGCTTATTACTGCTAA
AA sequence Show only first row Show all	>Lus10015641 pacid=23147258 polypeptide=Lus10015641 locus=Lus10015641.g ID=Lus10015641.BGIv1.0 annot-version=v1.0 MERSSSSSSISHRRHHHHSRDNPSFSSTLLDSIYRSFDDPSSAAVATDRRRNPRPPIRCVSDDNINSTARLRQNGAFRRKSVGAEIYSNSSSSSSDSSYG TGLTGFESADDSRSNLKPIRTSSSFSSTAAAQFRSGNCISDGGGEFVKKKSRSLKKMYGDLKKSKHQPPISPGGRLANFLNSLFTAGNVKKAKFSGGGDE IRPSDSSNCSSASSFSRSCLSKTPSSRGGGKRSVRFYPVNVIVDEESRPCGKRNVMEAENEELKLRDDDDDDGASCASSDLFELDNLSAIGGIERYREEL PVYETTHLSANHRTAAYYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13980			unknown protein		Lus10015641 [exp]	0	1
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	1.7	0.8478
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	6.3	0.8359
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	6.7	0.8548
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	7.3	0.8172
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	7.9	0.8528
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	18.1	0.8466
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	21.0	0.8238
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	21.8	0.8328
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	22.0	0.7847
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	24.0	0.7808

Compare expression of checked genes

Lus10015641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.