Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06530 329 / 6e-115 VPS2.1 SNF7 family protein (.1) AT1G03950 128 / 4e-36 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT5G44560 118 / 2e-32 VPS2.2 SNF7 family protein (.1.2) AT5G22950 54 / 2e-08 VPS24.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037660 [exp] 381 / 2e-135 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10017166 [exp] 305 / 2e-105 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10021561 [exp] 158 / 1e-48 AT2G06530 194 / 1e-63 SNF7 family protein (.1) Lus10021562 [exp] 134 / 3e-40 AT2G06530 134 / 3e-41 SNF7 family protein (.1) Lus10038407 [exp] 115 / 4e-31 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2) Lus10033914 [exp] 108 / 9e-29 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10023396 [exp] 85 / 4e-19 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2) Lus10003538 [exp] 45 / 3e-06 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170400 [exp] 328 / 1e-114 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.018G065100 [exp] 308 / 9e-107 AT2G06530 332 / 9e-117 SNF7 family protein (.1) Potri.011G154700 [exp] 132 / 1e-37 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.001G442500 [exp] 129 / 1e-36 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.005G227000 [exp] 119 / 8e-33 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 119 / 1e-32 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.006G144300 [exp] 72 / 3e-16 AT2G06530 62 / 7e-13 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10015642 pacid=23147201 polypeptide=Lus10015642 locus=Lus10015642.g ID=Lus10015642.BGIv1.0 annot-version=v1.0 ATGAGTTTTCTGTTCGGTAACAGAAAGACTCCCGCCGGTAAGCTTTTTCGCTGCTACTTCTTCCTCTGTCGATCTCGCCTTGTTTTGGAATCTGGCGAAG TTTCTTCATCCCAATTTGTTCAGATTGTTAATTTGGCGGGGATTTATGCAGAGCTGTTGAGGGAGAACAAGCGGATGATCGACAAGTCAATAAGGGACAT AGAGAGGGAAAGGCAAGGCCTCCAGACCCAGGAGAAGAAGCTCATCGCTGAGATCAAGAAGAATGCTAAGAATGGTCAGATGGGAGCTGTAAGAGTGATG GCAAAAGATCTTATCAGAACAAGGCACCAGATTGAGAAGTTCTATAAGCTCAAATCGCAACTCCAGGGTGTCTCCTTGAGAATACAGACGTTGAAATCGA CTCAAGCAATGGGGGAAGCCATGAAAGGTGTCACGAAAGCAATGGGGCAGATGAACAGGCAGATGAACTTGCCATCTCTGCAGAAAATAATGATGGAATT CGAGAGGCAGAATGAAAAAATGGAGATGACTTCGGAGGTGATGGGAGACGCCATCGACGATGCCCTTGACGAAGACGACGAGGAGGAGGAAACCGACGAG CTTGTGAGCCAAGTTCTTGATGAGATCGGTATCGATATTAACAACGAGCTGGTTAATGCTCCTTCGGCAACTGTGTCGGCCACACCTGCTGGAATGAACA AAGTTGCTCAGACTGAATCGAGCGGGAATCATGAAGATGGCGGAGGTCTAGATGATGACTTGCAGGCAAGGTTAGACAACTTGAGGAAGATGTGA
AA sequence Show only first row Show all	>Lus10015642 pacid=23147201 polypeptide=Lus10015642 locus=Lus10015642.g ID=Lus10015642.BGIv1.0 annot-version=v1.0 MSFLFGNRKTPAGKLFRCYFFLCRSRLVLESGEVSSSQFVQIVNLAGIYAELLRENKRMIDKSIRDIERERQGLQTQEKKLIAEIKKNAKNGQMGAVRVM AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMMEFERQNEKMEMTSEVMGDAIDDALDEDDEEEETDE LVSQVLDEIGIDINNELVNAPSATVSATPAGMNKVAQTESSGNHEDGGGLDDDLQARLDNLRKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	0	1
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	1.7	0.9056
AT2G43760			molybdopterin biosynthesis Moa...		Lus10026805 [exp]	2.0	0.9003
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	4.0	0.8940
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	4.2	0.8974
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	6.5	0.8861
AT1G69980			unknown protein		Lus10036679 [exp]	6.6	0.8722
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	6.7	0.8830
AT4G13530			unknown protein		Lus10030342 [exp]	7.4	0.8868
AT1G36980			unknown protein		Lus10035779 [exp]	7.5	0.8836
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	13.7	0.8573

Compare expression of checked genes

Lus10015642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.