Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 182 / 5e-58 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 179 / 8e-57 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G05930 141 / 7e-42 GLP8 germin-like protein 8 (.1) AT3G62020 138 / 9e-41 GLP10 germin-like protein 10 (.1.2) AT1G09560 132 / 3e-38 GLP5 germin-like protein 5 (.1) AT1G02335 130 / 6e-38 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G39160 129 / 3e-37 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 128 / 6e-37 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 126 / 5e-36 RmlC-like cupins superfamily protein (.1) AT5G26700 125 / 1e-35 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037661 [exp] 383 / 2e-137 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 325 / 2e-114 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 289 / 4e-100 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 286 / 4e-99 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 277 / 1e-95 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 263 / 7e-90 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 220 / 1e-72 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 207 / 6e-68 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10022020 [exp] 202 / 8e-66 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 209 / 8e-69 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 207 / 5e-68 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 187 / 3e-60 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.011G163800 [exp] 132 / 2e-38 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.013G000500 [exp] 131 / 3e-38 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.011G162932 [exp] 129 / 2e-37 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 129 / 2e-37 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 129 / 3e-37 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 127 / 2e-36 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.010G238200 [exp] 126 / 2e-36 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015643 pacid=23147218 polypeptide=Lus10015643 locus=Lus10015643.g ID=Lus10015643.BGIv1.0 annot-version=v1.0 ATGTCGTATCACCTCCTCTTTGCCACTTTTCTCCTCTGTTTCCACTACTCCGCACGCGCTGCGGATTTTTGCGTGGCGGACCTAACCACCCAAACCCGGT CCGGCTACGCGTGTAAGGACCCCGCCAAAGTCATCGCCGGTGACTTCGTCTTCACGGGAATAACCAAGCCGGGCAACACCAGCAACCCCAACAAGGCAGT CGCAGTCTTGGGCTTGGTCCAGCAATTTCCGGCCCTGAATGGTCTGGGACTCTCCATAGTTCGCGCTGATTTCGCGCCAGGCGGCGTGATCCAACTGCAC ACCCACCCGGCGGCATCGGAGTTGGTCTATGTGGTGGAGGGGACCCTCAGGGTGGGGTTCGTCGCTGCGGATACAAACAAGGTGTACGTGAATACGATCA AAAAAGGGGAAGTGACTGTGTTCCCTCAGGGGCTCCTGCATTTCGTGGTGAATGCTGATACCACCATGCCGGCCATGACGGTGGTGGTGTTCAGCAGTCC GGAACCGGGGAATCAGTTGGTGAGTTCTGCGCTCTTCGGGAATGATCTCGCGTCGGCTTTGGTGGAGAAGACGACCGGCATTGGTGAATCCGAAGTGAAA TGGCTCAAAGCTCTTCTTGGTGGTTCTGGCTAA
AA sequence Show only first row Show all	>Lus10015643 pacid=23147218 polypeptide=Lus10015643 locus=Lus10015643.g ID=Lus10015643.BGIv1.0 annot-version=v1.0 MSYHLLFATFLLCFHYSARAADFCVADLTTQTRSGYACKDPAKVIAGDFVFTGITKPGNTSNPNKAVAVLGLVQQFPALNGLGLSIVRADFAPGGVIQLH THPAASELVYVVEGTLRVGFVAADTNKVYVNTIKKGEVTVFPQGLLHFVVNADTTMPAMTVVVFSSPEPGNQLVSSALFGNDLASALVEKTTGIGESEVK WLKALLGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015643 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10020085 [exp]	5.7	0.7590
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10010201 [exp]	6.2	0.7914
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	41.0	0.7298
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	60.0	0.7111
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	61.8	0.6951
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10008656 [exp]	62.0	0.6702
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	71.0	0.6818
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	80.1	0.6790
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	87.5	0.7030
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	92.2	0.6723

Compare expression of checked genes

Lus10015643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.