Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 188 / 1e-60 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 178 / 2e-56 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G62020 135 / 1e-39 GLP10 germin-like protein 10 (.1.2) AT5G39160 133 / 1e-38 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 132 / 2e-38 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT1G02335 131 / 6e-38 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G26700 130 / 6e-38 RmlC-like cupins superfamily protein (.1) AT1G09560 130 / 1e-37 GLP5 germin-like protein 5 (.1) AT5G39130 130 / 2e-37 RmlC-like cupins superfamily protein (.1) AT3G05930 129 / 3e-37 GLP8 germin-like protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020026 [exp] 327 / 6e-115 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 299 / 4e-104 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 291 / 1e-100 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 281 / 4e-97 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 281 / 9e-97 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037662 [exp] 241 / 1e-82 AT5G20630 124 / 2e-36 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 233 / 5e-78 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 204 / 8e-67 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10010769 [exp] 204 / 1e-66 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 204 / 8e-67 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 204 / 2e-66 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 189 / 1e-60 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.011G163800 [exp] 134 / 2e-39 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.010G238200 [exp] 132 / 1e-38 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 132 / 3e-38 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163200 [exp] 131 / 6e-38 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 130 / 8e-38 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 130 / 1e-37 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.008G020800 [exp] 130 / 1e-37 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015644 pacid=23147243 polypeptide=Lus10015644 locus=Lus10015644.g ID=Lus10015644.BGIv1.0 annot-version=v1.0 ATGACGTTTCACACTAATGCACTCATCTCCGTGGCCGTTTTGCTCCTCGTCTCATGCAGCTACTCCGCACGCGCCGCGGATTTCTGCGTAGCCGATCTAA CCCTCCAAACCGCATCGGGATACGCGTGCAAGGACCCCACCAAAGTCACCGCCGCCGACTTCCTCTTCACCGGAATATCCCATCCGGGGAACACCAGCAA CCTCTTCAAGGCGATCGCTGCCCCTGCCTCGGTTAGGCAATTCCCAGCCCTGAACGGGCTGGGAATCTCCATGGCCAGAGCAGATTTCGCCCCCGGTGGA GTGATCCCGCTCCACACCCACCCGGCGGCTACGGAGATAGCGTACTTGATCGATGGGTCCGTCACGGTGGGGTTCATCACCCCAGGGACCAACAAGGTCT ACTTGAACAAGATCAATAAGGGGGAAGTGACTGTGTTTCCTCAGGGGACTCCGCATTTCGTGGTGAATCTCGATACGACGAGACCTGCTACGGCGGTAGT CGGGTTTAGTAGCCCCGAACCAGGGAATCTGATTGTGAGTTTGGCTATGTTTGGGAATGATTTGCCGTCGGTTTTGCTTGAGAGGTCGACCGGCATTGCT GATTCCGAAGTGAAGAGGCTTAAAGCTCTTCTTGGTGGTTCTGGCTAA
AA sequence Show only first row Show all	>Lus10015644 pacid=23147243 polypeptide=Lus10015644 locus=Lus10015644.g ID=Lus10015644.BGIv1.0 annot-version=v1.0 MTFHTNALISVAVLLLVSCSYSARAADFCVADLTLQTASGYACKDPTKVTAADFLFTGISHPGNTSNLFKAIAAPASVRQFPALNGLGISMARADFAPGG VIPLHTHPAATEIAYLIDGSVTVGFITPGTNKVYLNKINKGEVTVFPQGTPHFVVNLDTTRPATAVVGFSSPEPGNLIVSLAMFGNDLPSVLLERSTGIA DSEVKRLKALLGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015644 [exp]	0	1
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	14.1	0.6239
AT5G36930			Disease resistance protein (TI...		Lus10027920 [exp]	21.5	0.6224
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	38.2	0.5885
					Lus10001379 [exp]	41.0	0.5731
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10033799 [exp]	43.2	0.6077
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	59.6	0.5981
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	69.5	0.5550
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	73.2	0.5450
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	83.1	0.5565
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10026606 [exp]	95.7	0.5581

Compare expression of checked genes

Lus10015644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.