Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 108 / 1e-29 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 98 / 3e-25 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G62020 86 / 6e-21 GLP10 germin-like protein 10 (.1.2) AT1G02335 82 / 3e-19 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G38960 80 / 2e-18 RmlC-like cupins superfamily protein (.1) AT5G39160 77 / 1e-17 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 77 / 1e-17 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G38910 76 / 4e-17 RmlC-like cupins superfamily protein (.1) AT5G38940 76 / 9e-17 RmlC-like cupins superfamily protein (.1) AT5G38930 75 / 1e-16 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037663 [exp] 211 / 9e-70 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 185 / 2e-59 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 183 / 2e-58 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 178 / 1e-56 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037662 [exp] 175 / 1e-56 AT5G20630 124 / 2e-36 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 176 / 1e-55 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10003652 [exp] 144 / 2e-42 AT4G25300 206 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037664 [exp] 133 / 6e-39 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 128 / 4e-37 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 111 / 2e-30 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 111 / 2e-30 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 100 / 1e-26 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.010G238200 [exp] 85 / 2e-20 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 82 / 3e-19 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 80 / 2e-18 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.014G110400 [exp] 79 / 4e-18 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.019G026000 [exp] 78 / 9e-18 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 78 / 9e-18 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 78 / 9e-18 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015645 pacid=23147251 polypeptide=Lus10015645 locus=Lus10015645.g ID=Lus10015645.BGIv1.0 annot-version=v1.0 ATGTTGCTACTCCGCACACGCCGCGGATTTCTGCATATCCGATCTATCCCTCCAAACCCCGTCCGGCTATGCCTGCAAGGACCTCACCAAAGCCTCCTCC AGCGACTTCGTCTTCACCGGAATATCCAAACAGTGCAACACTTCCAACCCCAACAAGGCAGCTGCTACCCTGGCCTTTGTCCACCAATGTCCAGCCCTAA ACGGGCTGGGAATCTCCCTACCCGGGCCGATTTCGCCCTGGACGGGGTGATCCCGCTCCACACCCACCCGAGGGCCACCGAGATGGCCTACCTGGTGGAG GGCACCCTCACGGTGGGGTTCGTCGCCGCGGGGACCAACAAGGTGTATGTGAATACAATCAGAAAGGGGGAAGTGACGGTGTTTCCTCAAGAGATGCCGC ATTTTGTGGTGAATGATGATACCAAAAGGCCAGCCGTGGTGCTTGTGGCTTTGAGCAGTCTCGATCCGGAGAATCTGTTGGTGAGTTCTGCGCTGTTTGG GAATGATCTCGCATCGGCTTTGGTGGAGAAGACGACCGGAATTGGTGAATCCGAAGCGAAAAGGCTTAAAGCTCTTTTCGGTGGTTCGGGTTAA
AA sequence Show only first row Show all	>Lus10015645 pacid=23147251 polypeptide=Lus10015645 locus=Lus10015645.g ID=Lus10015645.BGIv1.0 annot-version=v1.0 MLLLRTRRGFLHIRSIPPNPVRLCLQGPHQSLLQRLRLHRNIQTVQHFQPQQGSCYPGLCPPMSSPKRAGNLPTRADFALDGVIPLHTHPRATEMAYLVE GTLTVGFVAAGTNKVYVNTIRKGEVTVFPQEMPHFVVNDDTKRPAVVLVALSSLDPENLLVSSALFGNDLASALVEKTTGIGESEAKRLKALFGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	3.2	0.9295
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10042438 [exp]	4.1	0.7570
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	4.5	0.9295
AT5G58890	MADS	AGL82	AGAMOUS-like 82 (.1)		Lus10020789 [exp]	5.1	0.6665
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	5.5	0.9295
AT1G09510			NAD(P)-binding Rossmann-fold s...		Lus10023097 [exp]	5.7	0.7641
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	6.3	0.9295
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	7.4	0.9171
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	7.7	0.9003
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	8.1	0.6898

Compare expression of checked genes

Lus10015645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.