Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 139 / 1e-40 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 133 / 1e-38 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT1G18980 81 / 2e-18 RmlC-like cupins superfamily protein (.1) AT1G18970 77 / 6e-17 GLP4 germin-like protein 4 (.1) AT5G39160 77 / 8e-17 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 76 / 1e-16 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G62020 76 / 1e-16 GLP10 germin-like protein 10 (.1.2) AT3G04150 76 / 2e-16 RmlC-like cupins superfamily protein (.1.2) AT5G39130 75 / 3e-16 RmlC-like cupins superfamily protein (.1) AT3G10080 75 / 4e-16 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037664 [exp] 292 / 1e-100 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 196 / 4e-63 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 192 / 1e-61 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 190 / 1e-60 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 189 / 4e-60 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 187 / 1e-59 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 187 / 1e-59 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 176 / 3e-55 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037665 [exp] 157 / 7e-48 AT1G72610 179 / 1e-56 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 172 / 1e-53 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 162 / 6e-50 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 148 / 2e-44 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.008G020800 [exp] 85 / 8e-20 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 84 / 2e-19 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.010G238200 [exp] 82 / 6e-19 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.001G464100 [exp] 81 / 2e-18 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.005G001300 [exp] 81 / 2e-18 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.011G163800 [exp] 81 / 2e-18 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.015G068200 [exp] 81 / 3e-18 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015646 pacid=23147268 polypeptide=Lus10015646 locus=Lus10015646.g ID=Lus10015646.BGIv1.0 annot-version=v1.0 ATGCCGTTTCACTCCCTTCACTTCTCCATCCTCCTCACCTTCCTCCTCTCCTCTTACTCCGCACACGCCGCGGATTTCTGCGTCGCCGACCTAACAATCC AAACGGCATCAGGATTCACATGCAAGAACCCATCAAACGTAACCGTTTCCGACTTCATCTTCACCGGCCTGATCAACCCGGGCAACACCACCAACATGAA CAAGGCATCCGCGAGCCCGGGGTTTGTCCAGCAGTTCCCTGCCTTGAACGGGTTGGGGATCGCTGTGGCCCGAGCCGATATTGAGCCGGGTGGGGCGATC CCGTTGCACACCCACCCGGCCGCCACGGAGATGCTCTACAGCCCGCCGCTCCCCGCCCCAAACGGGGTTGCGGCTCGGTGTGGTTCGAGCCGACATCGAG CCGGGCGGTGCGATCCCGCTGCACACCCACCCGGCCGCCACGGAGATGCTCTACATGGTGGAAGGGACCATCGTGACCGGGTTCATCTCTGGGGCGGCCA ACGTGGCGTACGTGACCAAGTTGAAAAAAGATGTGTCGTCCAGGTGAATATTGGGACGGAGCATGCAATGGGGATCGCCAGCTTCAGCGACTCGGAACCA GGTGTTCAGTTGGTGAGCGTGGCACTGTTTGGGAACGATTTCGGGTCGTTTTTGGTCGAGAAGACAACCAACATCGATGAAGCCGAGGTGAAGAAGCTCA AGGCTCTTCTTGGTGGTTCCGGCTAA
AA sequence Show only first row Show all	>Lus10015646 pacid=23147268 polypeptide=Lus10015646 locus=Lus10015646.g ID=Lus10015646.BGIv1.0 annot-version=v1.0 MPFHSLHFSILLTFLLSSYSAHAADFCVADLTIQTASGFTCKNPSNVTVSDFIFTGLINPGNTTNMNKASASPGFVQQFPALNGLGIAVARADIEPGGAI PLHTHPAATEMLYSPPLPAPNGVAARCGSSRHRAGRCDPAAHPPGRHGDALHGGRDHRDRVHLWGGQRGVRDQVEKRCVVQVNIGTEHAMGIASFSDSEP GVQLVSVALFGNDFGSFLVEKTTNIDEAEVKKLKALLGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031208 [exp]	1.0	0.9894
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	3.5	0.9630
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	4.9	0.9624
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10022349 [exp]	5.2	0.9334
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	8.8	0.9462
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	9.2	0.9615
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	9.2	0.9460
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	10.4	0.9462
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	14.0	0.9605
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	16.4	0.9576

Compare expression of checked genes

Lus10015646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.