Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72610 184 / 8e-59 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G20630 181 / 7e-58 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G18980 128 / 1e-36 RmlC-like cupins superfamily protein (.1) AT1G18970 122 / 2e-34 GLP4 germin-like protein 4 (.1) AT5G26700 118 / 4e-33 RmlC-like cupins superfamily protein (.1) AT3G05930 116 / 3e-32 GLP8 germin-like protein 8 (.1) AT3G62020 114 / 2e-31 GLP10 germin-like protein 10 (.1.2) AT1G02335 113 / 5e-31 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G61750 110 / 6e-30 RmlC-like cupins superfamily protein (.1) AT3G10080 110 / 9e-30 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037666 [exp] 397 / 9e-143 AT1G72610 181 / 9e-58 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10036296 [exp] 251 / 4e-85 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037665 [exp] 230 / 1e-76 AT1G72610 179 / 1e-56 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037664 [exp] 218 / 6e-72 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 192 / 4e-62 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 190 / 5e-61 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10010769 [exp] 188 / 2e-60 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10022020 [exp] 185 / 5e-59 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 183 / 2e-58 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169000 [exp] 196 / 1e-63 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.003G065266 [exp] 193 / 1e-62 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 178 / 1e-56 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.015G068200 [exp] 129 / 4e-37 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 125 / 5e-36 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 121 / 4e-34 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.010G238200 [exp] 120 / 1e-33 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.014G110400 [exp] 119 / 2e-33 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 117 / 8e-33 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.011G163800 [exp] 116 / 3e-32 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015647 pacid=23147245 polypeptide=Lus10015647 locus=Lus10015647.g ID=Lus10015647.BGIv1.0 annot-version=v1.0 ATGGAAACCAAACTCCAACTCCTCAGTCTCACAATCCTCTTCTACACCCAATCCGCACACGCCGCGGATTTCTGCGTAGCCGACCTAGCCTCCCGGGAAA CCTCCACCGGCTACCCATGCAAAAGCCCCTCAAACGTCACCGTCGACGACTTCGTCTTCAAGGGCTTCACCGCCCCATTAAGCACATCCAACCCAAACAA GCTCTCCCTGAACCGGGCCTTCGTCAAGAGCTTCCCAGCCCTCAACGGGTTGGACCTAGCCGCGGTCAGGGTGGACATGGAGCGGGACGGGGTGGTTCCG CTCCACTCCCATCCTTACTCTCCCGAGATGATCTTCATCATCGAGGGGACAGTAACGGCCGGGTTCGTGTCCGGTCTGGACTCCAACGTGGCCTACATCA AGACGCTGAACAAGGGGGAGATGATGGTGATTCCGCAAGGGTTCCTCCATTTCCAGGCGAACAGTGGGCCCGGGAATGCGACGATCTTTGTGAATTTTAA CAAGGCGGATCCAGGAGTGCAGTTTATCACCGGAGCCCTGTTCAGGAATAGTTTTCCGACTTGGCTTTTGGAGAAGACGACTGGGATTAGTCAGGCGGAG ATCAGGGATCTTAAGAATCTTCATGGTGGGTCCGGCTAA
AA sequence Show only first row Show all	>Lus10015647 pacid=23147245 polypeptide=Lus10015647 locus=Lus10015647.g ID=Lus10015647.BGIv1.0 annot-version=v1.0 METKLQLLSLTILFYTQSAHAADFCVADLASRETSTGYPCKSPSNVTVDDFVFKGFTAPLSTSNPNKLSLNRAFVKSFPALNGLDLAAVRVDMERDGVVP LHSHPYSPEMIFIIEGTVTAGFVSGLDSNVAYIKTLNKGEMMVIPQGFLHFQANSGPGNATIFVNFNKADPGVQFITGALFRNSFPTWLLEKTTGISQAE IRDLKNLHGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015647 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	12.4	0.8128
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	18.3	0.8476
AT5G06730			Peroxidase superfamily protein...		Lus10008173 [exp]	61.0	0.8191
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10029692 [exp]	70.8	0.8063
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	126.0	0.7787
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10025801 [exp]	128.8	0.7919
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10031367 [exp]	177.8	0.7657
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	185.2	0.7765

Compare expression of checked genes

Lus10015647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.