Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 76 / 7e-16 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 71 / 3e-14 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 66 / 2e-12 TAO1 target of AVRB operation1 (.1) AT4G19520 64 / 7e-12 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45200 64 / 7e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G17050 64 / 1e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 63 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17880 62 / 3e-11 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16960 62 / 4e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 61 / 7e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015648 [exp] 285 / 2e-89 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024150 [exp] 181 / 4e-53 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 176 / 1e-51 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10010223 [exp] 162 / 4e-46 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042778 [exp] 158 / 8e-45 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001281 [exp] 145 / 5e-43 AT1G69550 67 / 2e-12 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10018021 [exp] 130 / 9e-35 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 126 / 1e-33 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011580 [exp] 118 / 1e-30 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030700 [exp] 92 / 2e-21 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 80 / 2e-17 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031899 [exp] 77 / 3e-16 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G068300 [exp] 77 / 3e-16 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 76 / 6e-16 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 73 / 7e-15 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G031101 [exp] 72 / 1e-14 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 71 / 2e-14 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G070393 [exp] 71 / 2e-14 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 71 / 3e-14 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10015649 pacid=23147275 polypeptide=Lus10015649 locus=Lus10015649.g ID=Lus10015649.BGIv1.0 annot-version=v1.0 ATGAGTACCTTAACTTCTCTTCATGTATTCTGTTGTAGAAGCCTCACAAGTATTCCAACTAGCATCAGCAATTTAAGATCTCTGATATCGCTTTGTTTAG TAGAGACGGGTATTAAGTCTCTGCCTTCTAGCATCCAAGAACTAAGGCAGCTTTTTTCGATTGATCTTAGAGATTGCAAAAGCCTCGAGTCAATTCCAAA CAGTATCCATAAGCTTTCCAAGTTGGTAACTTTGTCAATGTCTGGCTGTGAGATCATTATATCTTTGCCTGAACTCCCACCAAATCTGAAGACCTTGAAC GTAAGTGGTTGCAAGTCTTTACAAGCTCTACCAAGCAACACATGTAAGCTGTTGTACCTGAATACGATCCATTTTGACGGATGTCCACAATTGGACCAGG CTATACCTGGCGAGTTCGTGGCAAATTTCCTCGTTCATGCCAGCTTGTCTCCGTCATATGAGATTGAAGCAGTAACAATTGGACCCACATCCATGGACTC CAACATGGCTTCAAATCTTGGCTCCTTGGCTTCATGTAGTCTCAAACACAAACTTAGGTGTGACCTGCCAACAAATGAAGTCACTGCAGCTCCTATCCCC AAGAAGATATAA
AA sequence Show only first row Show all	>Lus10015649 pacid=23147275 polypeptide=Lus10015649 locus=Lus10015649.g ID=Lus10015649.BGIv1.0 annot-version=v1.0 MSTLTSLHVFCCRSLTSIPTSISNLRSLISLCLVETGIKSLPSSIQELRQLFSIDLRDCKSLESIPNSIHKLSKLVTLSMSGCEIIISLPELPPNLKTLN VSGCKSLQALPSNTCKLLYLNTIHFDGCPQLDQAIPGEFVANFLVHASLSPSYEIEAVTIGPTSMDSNMASNLGSLASCSLKHKLRCDLPTNEVTAAPIP KKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10015649 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10015650 [exp]	1.0	0.8260
AT2G34050			unknown protein		Lus10007055 [exp]	5.3	0.5949
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	6.5	0.7797
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	15.1	0.6113
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	22.8	0.5936
AT1G04670			unknown protein		Lus10002298 [exp]	24.2	0.5936
					Lus10000273 [exp]	25.5	0.5936
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	26.7	0.5936
					Lus10039450 [exp]	27.5	0.6312
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	27.9	0.5936

Compare expression of checked genes

Lus10015649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.