Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 143 / 1e-40 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 120 / 3e-33 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 113 / 1e-28 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 108 / 3e-27 GRF ATGRF1 growth-regulating factor 1 (.1) AT5G53660 105 / 2e-26 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G36400 102 / 4e-25 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 95 / 1e-22 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G24150 94 / 4e-22 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 81 / 2e-17 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 41 / 0.0007 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037668 [exp] 392 / 6e-140 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10020352 [exp] 144 / 2e-41 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 143 / 1e-39 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 137 / 1e-38 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10033441 [exp] 138 / 3e-38 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 137 / 3e-38 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10014380 [exp] 107 / 4e-28 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011559 [exp] 109 / 2e-27 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 108 / 4e-27 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169100 [exp] 149 / 2e-43 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 149 / 6e-43 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 146 / 2e-42 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 145 / 1e-41 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 138 / 4e-39 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 135 / 3e-38 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.012G022600 [exp] 130 / 7e-35 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.015G006200 [exp] 126 / 1e-33 AT5G53660 132 / 4e-34 growth-regulating factor 7 (.1) Potri.002G115100 [exp] 126 / 3e-33 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.001G132600 [exp] 121 / 9e-33 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10015651 pacid=23147265 polypeptide=Lus10015651 locus=Lus10015651.g ID=Lus10015651.BGIv1.0 annot-version=v1.0 ATGCTGAGTACAAGAACAACAAACACCAATTCGTCCTCTTGTTCTTCACCATTCACAGCAACACAGTGGCAAGAACTGGAGCACCAAGCTCTGATCTACA AGTACATGGTCTCAGGCCTCCCAATCCCACCTCAGCTCCTCTCCCCACTGACATGGGGATCATGTTTCCAAGTCGGTTTTTCCAAAAAGACAGATCTTGA GCCAGGGAGGTGCAGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAAGGAAGCGTACCCCGATTCGAAATACTGCGAGCGGCACATGCATCGCGGGAAG AACCGGTCGAGAAAGGCTACGGTGGATGTGTCAAGTTCTTCTTCATCGTGTGCTCGGAATGTTTTGGCGAATGTGAATGGTGTTGGTGGAATCAATCAGT ATGGACAGAGTGCTCTGTTCACGGACTCTGCTGCTAATTCTGTGTCTTCTCCTTGTCAGGTTCATCTTCCTGATTATAACAGGTACGTTCATGGAGTGAA AGTGGAAGACAACATGCAGCAACTCTCATCATCATCATCATCCAAAGGGTACTACTGCTCTCCACAGTCAGATCTTCAGAGCTTTCCCTACCCATCAATG AGGCCAATTATAAGTTACAGTCATGAAACCCAGAAGCCTTTGCACCAGTTCTTTGGTGGCACCACTGATCACTCTTGGCTGGATCTTGCCTCAAGTTCAA GACCTTCTTAG
AA sequence Show only first row Show all	>Lus10015651 pacid=23147265 polypeptide=Lus10015651 locus=Lus10015651.g ID=Lus10015651.BGIv1.0 annot-version=v1.0 MLSTRTTNTNSSSCSSPFTATQWQELEHQALIYKYMVSGLPIPPQLLSPLTWGSCFQVGFSKKTDLEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGK NRSRKATVDVSSSSSSCARNVLANVNGVGGINQYGQSALFTDSAANSVSSPCQVHLPDYNRYVHGVKVEDNMQQLSSSSSSKGYYCSPQSDLQSFPYPSM RPIISYSHETQKPLHQFFGGTTDHSWLDLASSSRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10015651 [exp]	0	1
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	6.6	0.8338
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	9.4	0.8372
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	11.2	0.8197
					Lus10012330 [exp]	21.1	0.8077
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	32.2	0.7797
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	44.9	0.7798
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10001024 [exp]	51.0	0.7589
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	83.8	0.7822
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	89.6	0.7847
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	92.3	0.7602

Compare expression of checked genes

Lus10015651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.