Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54215 44 / 2e-05 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037669 [exp] 142 / 2e-43 AT1G54215 44 / 6e-06 proline-rich family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064900 [exp] 61 / 5e-12 AT1G54215 49 / 2e-07 proline-rich family protein (.1) Potri.001G169200 [exp] 48 / 2e-07 AT1G54215 43 / 2e-05 proline-rich family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12301 [flax] [poplar] CD99L2 CD99 antigen like protein 2
Representative CDS sequence Show only first row Show all	>Lus10015652 pacid=23147239 polypeptide=Lus10015652 locus=Lus10015652.g ID=Lus10015652.BGIv1.0 annot-version=v1.0 ATGGAGATTCGAGCTTCATGCTCGGTAATCGTGGTTCTGTGGCTTGGGTTAGCGTTTTTTTCCGCCCTTGTCGAGTCTCAGCACATTGTATCGAAGTCAA CGTCATCGCCGGCGACGAGGTCAACCCCACCTCCGCCGCCGCCTAAAACCAAAAAACTCTCTCCACCGACCAAGAAACACGCTAAAGAGGAGAATTTATT CTCCAACGATGACAAGAAACAGTCTCCATCTCCGCCGCCGCCGTCGGAGAAGAAAAGTCGTCACAAAGCGAAATCAAAATCCTACGACGATGACGATGAG GATCGTGAAACAGAGGATCGTGAGACAGAGGATCATGAAACAGAGCATAATTATGAAAGAAAAGAGGAGCAGAGGAAGAAGAAGAAGATGAACGCCGGGA AGGTGACCGGAATGGTGTTCTTGGGGATTGCAGGGGCAATGCAAGTAGGGGTTGTTGGGTTTTTGGTTGTCAAGAGAAAGCAGCTGATGATGATCGAAGA TAGATATGAACCTTACTCTACTTCATGA
AA sequence Show only first row Show all	>Lus10015652 pacid=23147239 polypeptide=Lus10015652 locus=Lus10015652.g ID=Lus10015652.BGIv1.0 annot-version=v1.0 MEIRASCSVIVVLWLGLAFFSALVESQHIVSKSTSSPATRSTPPPPPPKTKKLSPPTKKHAKEENLFSNDDKKQSPSPPPPSEKKSRHKAKSKSYDDDDE DRETEDRETEDHETEHNYERKEEQRKKKKMNAGKVTGMVFLGIAGAMQVGVVGFLVVKRKQLMMIEDRYEPYSTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	1.7	0.8433
AT3G27030			unknown protein		Lus10041550 [exp]	5.3	0.7861
AT1G58330		ZW2	transcription factor-related (...		Lus10025265 [exp]	5.9	0.7686
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	6.0	0.7665
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	6.7	0.7537
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	7.1	0.7751
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	10.6	0.7595
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	12.0	0.7408
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	14.5	0.7533
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	17.2	0.7462

Compare expression of checked genes

Lus10015652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.