Plant FIBer expression Database

Lus10015654 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037670
[exp]
100 / 9e-25 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G064700
[exp]
40 / 0.0006 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10015654 pacid=23147185 polypeptide=Lus10015654 locus=Lus10015654.g ID=Lus10015654.BGIv1.0 annot-version=v1.0
ATGAGCAAGTGGCTACAGAGCTTCTCTCTCACCCCACACCTTAGAATTAATCATCATGATGAAGTTGATGCCTATGTCGATGATGATGATCATCAAATTA
CTAATAACACCGGTGGAGGTGGAGATGGAGATGGAGAACAACTCCCACTTCCCTTCTCTCTCTCCGCCGTCGATCCCTTCTCTTCCACCGCCGCCGCCGA
CGGTCCAAAGCTTGAAGACTTCTTCGGCGGTGCAACTACTACTACCGGAATCAACGTCAACATCCCGCCGCCACCACCACAGACCCTAACGATCCCGACC
GGAGATATTATCTTCCCCGACAATTACATACCCACCGCCGCCACGTATCATTTCGACGGTGGCGGTGGAGGTGGTGCGGTATCTTCTTCACCACTGCCAC
CACCGCCGTCTGGGTTCAAGTCGTGGCTGAGACAGGAGCACCAAGAAGTTTGTCGTGGGGATATCAGGAATCAGCAGACGCTGTCGCTGTCGTCAATGGT
GAGTCCAGTGACGAACGACGGGTTAGTGGCCGCCGCCGCCGGCGGTGATAATGGAGATGGTAAGGGTAAAAGGGTAAATGGGAAGGCTGTTGATACGTTT
GGGCAAAGGACTTCTCAGTTTCGAGGTGTTACTAGGTACGGATTAGGCTACCTTAATTAA
AA sequence
>Lus10015654 pacid=23147185 polypeptide=Lus10015654 locus=Lus10015654.g ID=Lus10015654.BGIv1.0 annot-version=v1.0
MSKWLQSFSLTPHLRINHHDEVDAYVDDDDHQITNNTGGGGDGDGEQLPLPFSLSAVDPFSSTAAADGPKLEDFFGGATTTTGINVNIPPPPPQTLTIPT
GDIIFPDNYIPTAATYHFDGGGGGGAVSSSPLPPPPSGFKSWLRQEHQEVCRGDIRNQQTLSLSSMVSPVTNDGLVAAAAGGDNGDGKGKRVNGKAVDTF
GQRTSQFRGVTRYGLGYLN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10015654
[exp]
0 1
AT5G63090 AS2 LOBB, LOB Lateral organ boundaries (LOB)... Lus10011906
[exp]
1.7 0.9920
AT1G72570 AP2_ERF Integrase-type DNA-binding sup... Lus10015653
[exp]
3.5 0.9884
AT5G67460 O-Glycosyl hydrolases family 1... Lus10002466
[exp]
3.7 0.9868
AT3G05600 alpha/beta-Hydrolases superfam... Lus10029878
[exp]
4.0 0.9911
AT3G60670 PLATZ transcription factor fam... Lus10015881
[exp]
4.0 0.9849
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10014528
[exp]
4.6 0.9907
Lus10007549
[exp]
4.9 0.9881
AT5G40030 Protein kinase superfamily pro... Lus10014501
[exp]
6.3 0.9770
AT2G02540 ZF_HD ATHB21, ZFHD4, ... ZINC FINGER HOMEODOMAIN 3, ZIN... Lus10010693
[exp]
6.7 0.9881
AT2G45480 GRF ATGRF9 growth-regulating factor 9 (.1... Lus10038002
[exp]
7.1 0.9818

Lus10015654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.