Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72560 829 / 0 PSD PAUSED, ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037671 [exp] 1096 / 0 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168100 [exp] 867 / 0 AT1G72560 1420 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Potri.003G066200 [exp] 864 / 0 AT1G72560 1451 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10015655 pacid=23147200 polypeptide=Lus10015655 locus=Lus10015655.g ID=Lus10015655.BGIv1.0 annot-version=v1.0 ATGGATGATCTTGAAAAGGCTGTGCTTATCAGTTTCGATGAATCCGGTTCCGTTGATTCTGCTCTAAAATCTCAGGCGGTTGCCTACTGCCAGCAGATGA AGGATAATACAACAGTGGGGAGGCTTTGCATCGAGAAGCTTGTGTTCTGCAAGCTTGTGCAAGTCCAGTTCTGGTGTTTGCAGACTCTTCACGAGGTCAT TAGTTTGAAGTACAGTCTATTGAGTTTGGAAGAGAAGGGTTTTTTCAGGAAGTCTGTTTTCTCATTGTGTGGTTTCGATGGAGGGGTTGTTGATGGTGGT AGTGAGAATAATGCTGTAAGATTCCTTGAAGGTCCTGCATTTATAAAGAACAAGCTTGCTCAGGTTTTGGTTACATTAATCTATCTAGAGTACCCTTCAG TGTGGCCTTCCGTGTTTGTTGATCTGTTGCCTCAGTTGAGCAAAGGGGCATTGGTGATTGACATGTTTTGCCGTGTTTTGAATGCCTTGGATGATGAATT GATCAGTCTGGATTACACAAGGACTCCGGAGGAGATGTCTGCAGCTAGCCGGGTTAAGGATGCGATGAGGCAGCAGTGTATAGGGCAGATAGTGAGAGCT TGGTATGACATTATTCGTTATGATCCTGCATATAGGAACAGTCTTGATATGCTTGATAAGATTGGAAGGGAAGAGGAAGATAGGATGGTGGAATTCAGGA AAGACCTTTTTGTGTTGCTCTCTAGTGTGGGTCGCGCTGCCCCTGAAGTTACGCAAGTTTTTATAAGAAATGCACTGGACAGTGCTGTTGCCTCTTCATC CGACGTAAATGTTGAGGAAGTGGAAGCTGCCCTTTCTCTTTTGCATGCTCTTCGGGAGTCTTTAAGCGATGAATCCATAAAGAATGGATCTTGTTTGCTG AGTGAATTGATCCCAATGTTAATCTCGACGAGATTTCCCTGCCATTCTAGTAGAACAGTTGCCCTTGTGTATTTGGAGACGATTAACAGATATATGAAGT TTTTCATGGAGAAGACTCAATATATTCCCATGGTACTGACTGCCTTTCTGGACGAGAGGGGAATACACCATCAGAACCTCCATGTGAGCCGCAGAGCAAG TTACCTTTTTATGCGGGTTGTGAAATTGCTTAAATCAAAACTGGTACCTTTCATAGAGACCATTTTGCTGAGCCTCCAAGATACAGTTGCCCGGTTCACA AGTATGGACTGTTCCTCTAATCAATATTCAGGAGCTGAAGATGGTAGCCATATATTTGAGGCAATTGGTATATTAATTGGGATGGAAGATGTACCACTGG AAAAACAATCCGAGTACCTGGCTTCCTTACTAACTCCTCTTTGTCGTCAGATTGAGGTGGTGCTTATGAATGCCAAGACACTGAATCCAGAAGAGTCTCA TGCAAAAATTGATAACGTTCAGCAGATAATAATGGCAATTAATGCCCTCAGCAAGGGTTTCAGCGAGCGGCTTGTAACTGGTAGCCGGCCAGCAATTGGT CTAATGTTCAAGAAGACATTGGACGCTCTCCTCCAAATTCTTGTAGCTTTTCCCAAAATAGAACCTCTCAGGAGCAAGGTTACTTCTTTTATCCATCGCA TGGTAGACACTTTAGGGGAGTCCGTGTTTCCTTATCTTCCCAAGGCATTGGAGCAATTGCTTGCAGAAAGCGAGACGAAGGAAATGGTTGGTTTACTTGT ACTGCTTAATCAGCTCATATGCAAATTCAACGTCGCAGTACACAGCATTCTGGAGGAAGTTTTCCCAGCAATTGCCGGTAGGATCTTTTCCATCATTCCG AGAAACGGTTTTCCTTCAGGACCTGGAACCAATACCGAGGAAATGAGGGAACTGCAAGAACTACAGAGAACGTTGTACACATTTCTCCACGTGATGGCAA CCCATGGTCTATCTTCAATTTTCCTCTTGACGAAAAGTCGAGTTTATTTGGAGCCGATGATGCAGTTACTGCTTTACACAGCTTGTGATCATAAGGATAC CCTTGTTAGAAAGGCATGTGTTCAGATATTCATCAGACTAATCAAAGACTGGTCTGTACCTTATGGTGAAGAGAAGGTGCCGGGTTTCCAAACTTTTGTG ATTGAAGTCTTTGCGACGAACTGCTGCTTGTACAGTGTACTCGACAAATCCTTTGAGTTCCGGGATGCAAACGCACACAATCTATTCGGAGAGATAGTTC AAGCTCAGAAGATCATGTATGAGAAGTTCGGTAACGATTTTCTTATCCATTTCGTATCGAAAAGCCTTAGCTCTTCACACTGCCCTCAGGAATTGGCAGA ACAGTACTGCCAAAAGTTACAGGCACTGGGATGGTTTGGGTTTTTCCCTGGTCAGACCAGCTATTCATCTTCCTCTCACCTCTCTGTTATAATTTTGTGT GGTAGCAGAGGAATGGCAGAAGGTGGCCGTCAGTTTACTGAGACAGTTCCCTCACGGCCCTTACAACGAATTCTCTAA
AA sequence Show only first row Show all	>Lus10015655 pacid=23147200 polypeptide=Lus10015655 locus=Lus10015655.g ID=Lus10015655.BGIv1.0 annot-version=v1.0 MDDLEKAVLISFDESGSVDSALKSQAVAYCQQMKDNTTVGRLCIEKLVFCKLVQVQFWCLQTLHEVISLKYSLLSLEEKGFFRKSVFSLCGFDGGVVDGG SENNAVRFLEGPAFIKNKLAQVLVTLIYLEYPSVWPSVFVDLLPQLSKGALVIDMFCRVLNALDDELISLDYTRTPEEMSAASRVKDAMRQQCIGQIVRA WYDIIRYDPAYRNSLDMLDKIGREEEDRMVEFRKDLFVLLSSVGRAAPEVTQVFIRNALDSAVASSSDVNVEEVEAALSLLHALRESLSDESIKNGSCLL SELIPMLISTRFPCHSSRTVALVYLETINRYMKFFMEKTQYIPMVLTAFLDERGIHHQNLHVSRRASYLFMRVVKLLKSKLVPFIETILLSLQDTVARFT SMDCSSNQYSGAEDGSHIFEAIGILIGMEDVPLEKQSEYLASLLTPLCRQIEVVLMNAKTLNPEESHAKIDNVQQIIMAINALSKGFSERLVTGSRPAIG LMFKKTLDALLQILVAFPKIEPLRSKVTSFIHRMVDTLGESVFPYLPKALEQLLAESETKEMVGLLVLLNQLICKFNVAVHSILEEVFPAIAGRIFSIIP RNGFPSGPGTNTEEMRELQELQRTLYTFLHVMATHGLSSIFLLTKSRVYLEPMMQLLLYTACDHKDTLVRKACVQIFIRLIKDWSVPYGEEKVPGFQTFV IEVFATNCCLYSVLDKSFEFRDANAHNLFGEIVQAQKIMYEKFGNDFLIHFVSKSLSSSHCPQELAEQYCQKLQALGWFGFFPGQTSYSSSSHLSVIILC GSRGMAEGGRQFTETVPSRPLQRIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	0	1
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10037671 [exp]	1.4	0.9420
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	3.7	0.9293
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	4.6	0.9136
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	4.9	0.9302
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	5.3	0.9356
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	5.5	0.9353
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	5.8	0.9424
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	6.2	0.9151
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	7.7	0.9413
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	11.7	0.9130

Compare expression of checked genes

Lus10015655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.