Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 854 / 0 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 819 / 0 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 225 / 5e-63 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 152 / 8e-39 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037672 [exp] 1287 / 0 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 993 / 0 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10022102 [exp] 872 / 0 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 192 / 4e-53 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 158 / 5e-40 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 123 / 5e-29 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 102 / 2e-22 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10011252 [exp] 79 / 9e-17 AT1G54130 87 / 5e-20 RELA/SPOT homolog 3 (.1) Lus10008755 [exp] 69 / 3e-12 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168200 [exp] 964 / 0 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 948 / 0 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 228 / 1e-63 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 167 / 7e-43 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 141 / 3e-35 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10015656 pacid=23147270 polypeptide=Lus10015656 locus=Lus10015656.g ID=Lus10015656.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCGACGACGATTGCTCTGTACGCCAGCCCGCCGAGCACGATATGCTCGGCTCCAAGCCACTGCTCGATTTCCACTGCTCACGATTTTGAAC TGAATCCTCGGTCTTCCTCGTCTGCTTCCGCTTCTGCTTCGTCTTCATCGTCGTACAGATCGCAGATCGGAGGGCTGTCGTGCTTGTTCTCTTCTCCCGG AGTGAAGCGCTCGTCGTTCTCCGGCGACAGGGAGGAGCTGAATGCTCTGTGGCATGATAGAGGCGATGAATTGAAGGAATTTGGGAGCAGTTCGTTTCGG AAGTGTTCGAGTAAGTTCGGTGGTGGTGGTGGTGGATCATCTTCGATGATGAAGAAGGAATCGAGTCCTGTTTCAGTGTTGCATGCTCCAATGTCGTGTT CGACCAGTCCTCCTTCCTCGAGGCTAGCTCGTGAAAGGAATGCTTGTGGTGGTGGTGATGTATGCTTTCCAAGCTCGATTCGATCCGGATTGTCGAACAG GTTGTTTGATGGATTTGTGACTCATGCATTAGGGTCTTGTGTTGACTATGATGCTGCTGGAGATGAATTAACGTTTAACATGGAGGATGGTGGCATTGTG GATGATCATGAGCCTTATGTTAAGGAGCTTTTGTTGGGTGCTCAAATGAGGCACAAGATCTTCTGCGAAGAGTTCGTCATCAAGGCGTTTTACGAGGCTG AGAAAGCTCATCGAGGACAGATTCGGGCAAGTGGCGATCCTTACCTGCAGCATTGTGTTGAGACCGCGGTTATCCTCGCGACGATTGGAGCTAACGCCAC TATGGTTGCTGCAGGGCTTTTACATGATACTCTTGACGATTCTTTCTTAAGCTATGACTCCATTGTCAAAGCCTTTGGAACTGGAGTTGCTGATCTGGTT GAAGGGGTTTCGAAGCTGAGTCACTTGAGCAAGCTGGCACGAAAGAACGACACAGCTAGCAGAACGGTTGAGGCGGATCGATTGCACACCATGTTCCTAG CAATGGCGGATGCTAGAGCTGTACTGATAAAGTTGGCAGATCGATTACACAACATGATGACTCTGGATGCACTTCCCTTGCTGAAGCAACACAGGTTTGC AAAGGAGACATTGGAGGTATTCGCTCCTTTAGCGAATCGCTTAGGGATCTCTGCGTGGAAGGAACAGCTGGAGAACTTGTGCTTCAAGCATCTGAACCCT GATCAGCATAAGGAGCTTTCGTCTCAGCTCGTGAAATCTTTCGACGAGGAAGTGATTACTTCTGCGACGGATAAATTGGGCAGTGCCTTGGACGGTGAAG CTATAGCTTACCATGTGCTGTCTGGTCGGCATAAGAGCTTGTATAGTATCTATCGCAAAATGTTGAAGAAGAAGCTGAAGATGGACGAGATCCACGACAT TCACGGGCTACGTTTGATCGTGAAGAATAAGGAAGATTGTTTCAGGGCATTGAGAGTTGTTCATCAATTGTGGCCTGAAGTACCCGGAAAGTTCAAGGAC TATATAAGCCGCCCCAAATTCAACGGGTATCAGTCTCTTCACACGGTAGTGATGGGCGATGGAGATATCCCGCTCGAAGTGCAGATCCGAACGAAGGAGA TGCATCTGCAGGCTGAGCTCGGATTCGCTGCTCATTGGAGATACAAGGAAGGTGATAGCAAACACCCTTCGTTTGTGTTGCAGATGGTTGAATGGGCTCG ATGGGTCGTAACTTGGCAATGTGAAACCATGAACAAAGACCGGTCCGATCCCGGAACCCAAACTTGCACGTTCCCTGTCCATTCGGAAGATTGCAAATAC TCTTGCAAACCGAACTGCGGCCAGGATGAGCCAGTCTTCATCATTATGATTGAGAACGATAAGATGTCGGTCCAAGAGCTGCCAGCAAATTCATCAGTCA TCGATCTGCTGGAACGAGCCGGGCGAGGTAGTAGCATGAGACGGGCGTCGTATGGATACCCGATAAAAGAAGAACTGAGGCCGAGACTGAATCATAACCC GGTGAGCGATCCTACCTGCAAGCTGAAGATGGGAGACGTCGTCGAGCTAAGTCCTGCAATTCCTGCAAAATCGTTAACCAAATATCGGGAGAAGATCCAG CGTATGTATGACTACCGAGGATCGAGTAGTAGCGTTGCACCGACTACTGCTAGTGGTGTTTCGGGTTGGAGAAGTTGA
AA sequence Show only first row Show all	>Lus10015656 pacid=23147270 polypeptide=Lus10015656 locus=Lus10015656.g ID=Lus10015656.BGIv1.0 annot-version=v1.0 MAVPTTIALYASPPSTICSAPSHCSISTAHDFELNPRSSSSASASASSSSSYRSQIGGLSCLFSSPGVKRSSFSGDREELNALWHDRGDELKEFGSSSFR KCSSKFGGGGGGSSSMMKKESSPVSVLHAPMSCSTSPPSSRLARERNACGGGDVCFPSSIRSGLSNRLFDGFVTHALGSCVDYDAAGDELTFNMEDGGIV DDHEPYVKELLLGAQMRHKIFCEEFVIKAFYEAEKAHRGQIRASGDPYLQHCVETAVILATIGANATMVAAGLLHDTLDDSFLSYDSIVKAFGTGVADLV EGVSKLSHLSKLARKNDTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLLKQHRFAKETLEVFAPLANRLGISAWKEQLENLCFKHLNP DQHKELSSQLVKSFDEEVITSATDKLGSALDGEAIAYHVLSGRHKSLYSIYRKMLKKKLKMDEIHDIHGLRLIVKNKEDCFRALRVVHQLWPEVPGKFKD YISRPKFNGYQSLHTVVMGDGDIPLEVQIRTKEMHLQAELGFAAHWRYKEGDSKHPSFVLQMVEWARWVVTWQCETMNKDRSDPGTQTCTFPVHSEDCKY SCKPNCGQDEPVFIIMIENDKMSVQELPANSSVIDLLERAGRGSSMRRASYGYPIKEELRPRLNHNPVSDPTCKLKMGDVVELSPAIPAKSLTKYREKIQ RMYDYRGSSSSVAPTTASGVSGWRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	0	1
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	4.4	0.7850
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	10.0	0.7617
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	11.2	0.7624
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	11.4	0.7618
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	17.0	0.7064
AT1G76360			Protein kinase superfamily pro...		Lus10016020 [exp]	17.3	0.6117
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	17.5	0.6739
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	18.2	0.7065
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	20.0	0.7118
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	24.4	0.7085

Compare expression of checked genes

Lus10015656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.