Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72050 380 / 2e-130 C2H2ZnF TFIIIA transcription factor IIIA (.1.2) AT4G06634 56 / 1e-08 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) AT5G04240 51 / 9e-07 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 47 / 3e-05 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037673 [exp] 585 / 0 AT1G72050 356 / 1e-121 transcription factor IIIA (.1.2) Lus10011009 [exp] 54 / 1e-07 AT4G06634 378 / 7e-130 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10043332 [exp] 42 / 0.0007 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10000585 [exp] 42 / 0.0008 AT4G06634 319 / 3e-107 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Lus10019482 [exp] 42 / 0.0008 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G108600 [exp] 454 / 2e-160 AT1G72050 410 / 3e-142 transcription factor IIIA (.1.2) Potri.019G081100 [exp] 431 / 6e-151 AT1G72050 413 / 2e-143 transcription factor IIIA (.1.2) Potri.004G221700 [exp] 61 / 7e-10 AT4G06634 432 / 4e-151 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.003G010400 [exp] 56 / 1e-08 AT4G06634 408 / 7e-142 zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3) Potri.008G037800 [exp] 44 / 0.0002 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.015G089000 [exp] 42 / 0.0006 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015657 pacid=23147234 polypeptide=Lus10015657 locus=Lus10015657.g ID=Lus10015657.BGIv1.0 annot-version=v1.0 ATGGAAGCTGAACTTCCGGAAGAAGCGATGGAGAAAGAGATGGAAGAAGCTCAGGATTCCTCATACACCACCACCACCACCTCCGACATCAGGCGGTACT TGTGCAAATACTGCGGAATTTCCCGATCTAAGAAGTATCTCATCTCGTCTCACATCCTTTCTCATCACAAGGATGAGATGAGCGACGAAGAAGAAGAAGC AGAAGAAGGGACGAAATCCAACACTTGTGAAGAGTGTGGAGCTTGCTTCAGGAAGCCTGCGTATCTGAGAGAACACATGCGGAGCCACTCCCTTGAGAGG CCGTTTAAGTGCACTGTTGAAGGATGTCCTGCCAGTTACCGAAGGAAGGATCACTTGAATCGTCATTTGCTTCAGCACAAAGAGAAGCTTTTCAAATGTC CAGTCGAGAGCTGTACCAGGGAGTTTGTACTCGAAAGTGACGTGGAGGGGCATGTTCGGGACAAACATTGCAAATCCTCTGAGGCAGATGGCTCGAAGCA GTACATGTGTGAGGAGCCTGGTTGTGGGAAGGCCTTTCCGTATCCATCAAAGCTTAAGAAGCATCAGGATTCTCATGGCAAGTCTTTATCCATAACCGAA TTGTTATATATAACCCTTGATTCTATTGAAGCCATCTGTCTAGAACCAGGCTGCGGAAAGAATTTCTCTAACGAACAATGCCTTAAAGCACATATTCAGG CATCCCACCAACACATCAACTGTGAGGTTTGTGGGAGTAAGCAGTTGAAGAAGAACATCAAGAGACATCTACGAAGCCACGAGGCCGGCAGTGAATCAAC AAAGAGAGTTTCGTGTGATCACGATGGCTGTGGCCTCACGTTTTCATCCAAAACGAATCTTAACAAGCATGTGAAGGCTGTTCATCTCGAAGCGAAGCCT TTTGCTTGCGGGTTTCCTCGCTGTGGGATGAGATTCTCGTACAAACATGTCCGAGACAATCACGAAAAATCTGGCTGCCATGTTTACACTTGTGGCGATT TTGAGGAATCCGACGAGCATTTCAGGTCGAGGCCAAGAGGTGGGATGAAAAGGATGTGTCCGAGCGTGGAGACGTTGTTAACTCGAAAGAGGGTTACTCT ACCACCTGAATTGGAGAACTGTCTGTAG
AA sequence Show only first row Show all	>Lus10015657 pacid=23147234 polypeptide=Lus10015657 locus=Lus10015657.g ID=Lus10015657.BGIv1.0 annot-version=v1.0 MEAELPEEAMEKEMEEAQDSSYTTTTTSDIRRYLCKYCGISRSKKYLISSHILSHHKDEMSDEEEEAEEGTKSNTCEECGACFRKPAYLREHMRSHSLER PFKCTVEGCPASYRRKDHLNRHLLQHKEKLFKCPVESCTREFVLESDVEGHVRDKHCKSSEADGSKQYMCEEPGCGKAFPYPSKLKKHQDSHGKSLSITE LLYITLDSIEAICLEPGCGKNFSNEQCLKAHIQASHQHINCEVCGSKQLKKNIKRHLRSHEAGSESTKRVSCDHDGCGLTFSSKTNLNKHVKAVHLEAKP FACGFPRCGMRFSYKHVRDNHEKSGCHVYTCGDFEESDEHFRSRPRGGMKRMCPSVETLLTRKRVTLPPELENCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	0	1
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	1.7	0.9015
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	2.8	0.8849
AT1G76405			unknown protein		Lus10016039 [exp]	3.5	0.8762
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	5.4	0.8507
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	7.3	0.8835
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	7.5	0.8645
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	10.2	0.8752
					Lus10006003 [exp]	14.1	0.8568
					Lus10024694 [exp]	15.2	0.8722
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	15.8	0.8683

Compare expression of checked genes

Lus10015657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.