Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 599 / 0 B-block binding subunit of TFIIIC (.1.2) AT1G59453 543 / 1e-169 B-block binding subunit of TFIIIC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037675 [exp] 1493 / 0 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10000374 [exp] 431 / 5e-142 AT1G17450 334 / 2e-103 B-block binding subunit of TFIIIC (.1.2) Lus10000409 [exp] 176 / 1e-49 ND / Lus10006533 [exp] 126 / 3e-31 AT1G17450 101 / 1e-23 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 655 / 0 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2) Potri.001G170001 [exp] 0 / 1 AT1G17450 75 / 2e-16 B-block binding subunit of TFIIIC (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04182 [flax] [poplar] B-block_TFIIIC B-block binding subunit of TFIIIC
Representative CDS sequence Show only first row Show all	>Lus10015661 pacid=23147280 polypeptide=Lus10015661 locus=Lus10015661.g ID=Lus10015661.BGIv1.0 annot-version=v1.0 ATGGACGCTCTAATCTCGTCAGCTCTCGAAGAAGTCTGCTACCGAGGAACCGCCGGCGTCAAATTGAATCCGCCGCCGTCTCCCGTCGTGAAAGCCAGTC TGTGGAGCAACCTCGTCTCCATTCCCACCGTTCAGTTCGTCGTCCAAGGGAAAGAAGCTGCTGCTACGCTCTCCCCGCAGGACAGGAGGATCCAACGTGT TGAGGATGCCGAGAAGCTGAAAGTAAAGATTGTAGCTAAGGAGCACCTTAGGGATTCGTTTGTTGGACTCTACGATGTCCCTTCCACTGGATTTAAACCT CTTCAGCGTCAAGCTCTTGAGCGGCTTGCCATTGCTAGAGAAGATGGCATTACCCAAATGGAACTCGCCAAAGAGTTTGGAATGGAAGGGAGAAACTTCT TTTACATAGTGAAGAACCTCGAGAGTCGAAATTTGATCGCGAGGCAACCGGCAACTGTAAGAACAATGGAAGCTGGTGGCGCCGGAGAAACGAAAAGTTG TGTCAGGACCAATTTGATGTTCTTGTCTCGTTTCGCAACGCGTTTAGACGTTCAGCTGATACTTGAAATCAATAAAGAAGAACAAGATCTTGTAAGTCCG GATGATCTTCAAGAGGCTGATGTAGATGAAGAGGAAAGTTCTGCCGGTGATCGTTTGAAGGATGGTGTGCTTGTAAAAGACTACTTACCTGCAATGCAAG CCATTTGTGATAAACTTGAAGGTGCCAATGGAAATGTGCTTGTTGTCTCAGATATTAAGAAGGAGCTGGGTTATAGTGGATATCATGGGCACAAAGCTTG GAGACTTGAAGCTGCTCTGGTTGAAGGGTTTGATGCTAAAGTAAATGAAAAGGTTTGTCTGGAAATGTTCCCAAATTCTGAAAGGAGTTTCTCTGTATGC AAACAACAAATAATTCTTGAGAACTCATCATTCTTCGGATCGTTGCAGGTTGAGCATTGCATACGTCTGTTGAAAAAGTTCTCCCCAGAAGTTTTCGAGA CCAAACTATCTAGAGGTAGTAGTGCATGCGACCGAAATAAGCAGCTGAAGTTTGGACGGAGGCCTAGAAGAAATGAACAACTTCTAGAACTTCCGATTGA CCACCAAATATTTGATGTTATCGCTGCGAAAGGAACTAAAGGAGCTACAGGCATAGAGGTGTGCTCGAGACTTGGCCTTGAGAAGAAAAAGACCTATGAG AGGTTTAATGATCTGATCTCTAGGTTTGGGATGCGTTGTCAGGCAGAAAGCCACAAAAAAACTGCTATATATAGGTATTGGACTCCTGCCAGTTATAACC CACAAGCATCAAAACCTGGTGTGGGTAAATTGGAAACATCTGCCGGACTTGGTGCTTCAGCATTTACTCCCGTCGATACTGATGTTCCTAAAAAATCCAC TGAAATATCTTTAATGAATAATCATTTGATTTCTGGAGTTGATTCCACTGATAAGAGACATGTAAGTGACGGAGGAATTGGTACAGAGTCTTTAAAAGGA GCAGCATCACGTTCTAAGTTTGTTGAAAATGGTAGAGCCAACTCTAGCCAAGTGCCAGACATTGACCATGTGTCTAAAGGAGCAGCTTCTAGTGCAGGAC CTGATGTTAGATCAAATGGTGCTTCATCAGAAACATCCCAGATAGCTCTGCTGAAGCAACCTTCTTCACACCAAATACCTCTAACTGCTGATACTGCACT GCGGGAGAAGAGGATACTTGAACGCTTACAGGAAGAGAAAATTCTCCTCAGAGTTGTGCTGCACAAATGGCTTATCAGTCTTGAGAAGGACAAGGGTATT ACAATGGGCCGGAGGACTATAGATCGTATTCTGAACAAGCTCCAAGAAGAAGGGCACTGTAGGTGTGTGACCTTTTATGTCCCTTCCGTTACGAACTGTG GGCGTAGCCGTATGGCTCATGTCATTCTGCATCCGTCCATTGATAGCGTCCTTCCTGAGCAAGTTTATGATAAACTGCGGGAATTTGAGAAGCAGTCTCG TCAAGCATCATCCAGGTGCAATGCTAAGGATTCCATTCCTGTATTAAGTGATGTCATAAGAACTCAGGTCCCTGTAGATTTAGATGACCAAACTGCTAAA TCAGAAACAATACGGTTCAATGGGTTTGTGTTGGCAAAAATGGTTCGTGCTAAGCTTTTGTACAACGTCTTATGGGAATTTTTGAGAACTTTAGATGGAT GGGACGATATTCTATTGTCTAGTTTGAAGGTTTTTTCACTACAAGCAGCCGTGAAGACCATTCCACTTGAGGTGTTCTTGCAAGTAGCAGGTTCTACTCA AAAGGTTGATAACTTGGTTGAGAAGTGCAAGTTAGGTTTGCGTCTCAGTGATCTTCCTGTAGAAGAATACAAGTCCTTGGTGGATACTCTGGCAAGTAGT AGGCTTTCAAAGATCGTTGACATATTAAGGCGATTAAAGGTGCTTCATTTCTATTATAACAAGCGTTACAGATATCCGGATACATCTGTGAATACCAACA TAGAGGATCCTCAACCAGCAGATAGATCGAGACGTGCTTCCTCTAGAAAACGAAAAAAATCATCACAGAATAATTCACAAAAGGACCATGCCGTAGACGA GGAGTTGGCTGAACCTGAGGTTGCTGAATTATCTGATGGTGCTGGCCGAGACATGGAAAGGCAATGTCCTTTGTTCCCAGGAGAGGATGATCACAATTTG CCGGTAGATCGAGAACAGTGCCATGAAGAAACTGTCATCAATTCACTTGATGCGGAAAGCAATCAATTGAGCCAGTATGCACTTTCCAAGATAAAGCCAA GGCGTGAAAAGAGGTTCTTATGGACAGATGATGCTGATAGGCTGTTGATTACCCAATATGCTAGACAACGTGCTATCCTTGGGGTGAGGTTCCATCGTGT TGATTGGAATCAAGTTTCTTGCTTACCTGGACCTCCTAGAACTTGTGCAAGAAGAATAACGACGCTCAAAAGAGATAAGACTTTAAGAAAAGCTTTGATG AAGCTGTGTAACATACTTAGTGAACGTTATGTGAAGTATCTAGAGAAAAGCCAGAGCACGTGTGAGAGTAATAATTTGACCAGAGTTCTTCATCCTTGCT CAACAGTGGGAAGTTCTGTTGGGCAGGCCCCTGGTATCAACTATACTGATGAAGCAGGTTCCGAGGAAGATCAGTGGGATGATTTCAATGAGTGA
AA sequence Show only first row Show all	>Lus10015661 pacid=23147280 polypeptide=Lus10015661 locus=Lus10015661.g ID=Lus10015661.BGIv1.0 annot-version=v1.0 MDALISSALEEVCYRGTAGVKLNPPPSPVVKASLWSNLVSIPTVQFVVQGKEAAATLSPQDRRIQRVEDAEKLKVKIVAKEHLRDSFVGLYDVPSTGFKP LQRQALERLAIAREDGITQMELAKEFGMEGRNFFYIVKNLESRNLIARQPATVRTMEAGGAGETKSCVRTNLMFLSRFATRLDVQLILEINKEEQDLVSP DDLQEADVDEEESSAGDRLKDGVLVKDYLPAMQAICDKLEGANGNVLVVSDIKKELGYSGYHGHKAWRLEAALVEGFDAKVNEKVCLEMFPNSERSFSVC KQQIILENSSFFGSLQVEHCIRLLKKFSPEVFETKLSRGSSACDRNKQLKFGRRPRRNEQLLELPIDHQIFDVIAAKGTKGATGIEVCSRLGLEKKKTYE RFNDLISRFGMRCQAESHKKTAIYRYWTPASYNPQASKPGVGKLETSAGLGASAFTPVDTDVPKKSTEISLMNNHLISGVDSTDKRHVSDGGIGTESLKG AASRSKFVENGRANSSQVPDIDHVSKGAASSAGPDVRSNGASSETSQIALLKQPSSHQIPLTADTALREKRILERLQEEKILLRVVLHKWLISLEKDKGI TMGRRTIDRILNKLQEEGHCRCVTFYVPSVTNCGRSRMAHVILHPSIDSVLPEQVYDKLREFEKQSRQASSRCNAKDSIPVLSDVIRTQVPVDLDDQTAK SETIRFNGFVLAKMVRAKLLYNVLWEFLRTLDGWDDILLSSLKVFSLQAAVKTIPLEVFLQVAGSTQKVDNLVEKCKLGLRLSDLPVEEYKSLVDTLASS RLSKIVDILRRLKVLHFYYNKRYRYPDTSVNTNIEDPQPADRSRRASSRKRKKSSQNNSQKDHAVDEELAEPEVAELSDGAGRDMERQCPLFPGEDDHNL PVDREQCHEETVINSLDAESNQLSQYALSKIKPRREKRFLWTDDADRLLITQYARQRAILGVRFHRVDWNQVSCLPGPPRTCARRITTLKRDKTLRKALM KLCNILSERYVKYLEKSQSTCESNNLTRVLHPCSTVGSSVGQAPGINYTDEAGSEEDQWDDFNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17450			B-block binding subunit of TFI...		Lus10015661 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	3.9	0.8460
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	7.1	0.8541
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	8.5	0.8630
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	10.0	0.8766
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	18.3	0.8401
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	19.7	0.8156
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	20.4	0.7863
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	20.8	0.8420
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	23.0	0.8235
					Lus10012497 [exp]	25.4	0.7334

Compare expression of checked genes

Lus10015661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.