Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63980 387 / 5e-133 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G64000 305 / 1e-101 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63990 299 / 3e-99 Inositol monophosphatase family protein (.1.2) AT5G09290 283 / 3e-93 Inositol monophosphatase family protein (.1) AT5G54390 203 / 1e-61 ATAHL, AHL HAL2-like (.1) AT4G05090 111 / 5e-27 Inositol monophosphatase family protein (.1) AT4G39120 44 / 0.0001 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT1G31190 42 / 0.0005 IMPL1 myo-inositol monophosphatase like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037677 [exp] 431 / 7e-152 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10038597 [exp] 212 / 5e-65 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 211 / 1e-64 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10018453 [exp] 183 / 3e-53 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10011231 [exp] 174 / 1e-49 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10007817 [exp] 113 / 1e-27 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10006739 [exp] 110 / 2e-26 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1) Lus10017976 [exp] 44 / 0.0002 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10041968 [exp] 44 / 0.0002 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105100 [exp] 398 / 2e-137 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 393 / 1e-135 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.011G124700 [exp] 212 / 6e-65 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 199 / 4e-59 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 195 / 8e-58 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.004G033200 [exp] 112 / 2e-27 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.009G120600 [exp] 45 / 6e-05 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10015663 pacid=23147206 polypeptide=Lus10015663 locus=Lus10015663.g ID=Lus10015663.BGIv1.0 annot-version=v1.0 ATGTCGATGGCAATAATGATGCGTCAGGCCCAAGGGTGTTGTTGTCACTTGAATGCTATAAATAACTGCAACATTACTTCTTTTACTTATCGTCACAGAA CCTCGTCAGCACCAATCGCCGGAGTACTAACACCGTCGTCAACTCTTTCTCTTTCTCTCCGCCGTCGCCGTCGCCAACCACCGTCTGTTTCTTCATCCGC AACTTCAATGTCGTCCTTGTCTTACGAAAAGGAGCTCCTGGCCGCCAAGAAGGCTGTGTGCCTCGCTGCCCGTCTTTGCCAGGCAAGATCACAAGCTGTT GTTAGTCTTGTTCTACAGAGGGAGCTTCCGTCTGTTCCATTTTCGTTAGTCGCTGAGGAGGACTCGGGCGATCTTCGGAATGATAGTGCCAGAGATATCA CAGCCCGCATTACGGAACTTGTTAATGATACCTTAAGCACTGACGGCTCTTCGTCAACTCTGTCAGTGGAACAAGTGCTCAAGGCCATCGATTGTGGTAT ATCTGAAGGAGGCTCTACGGGAAGGCATTGGGTTTTGGACCCGATCGATGGTACTAAAGGGTTTGTAAGAGGAGATCAGTATGCAATAGCATTGGCACTG CTGGATGAAGGGAAAGTTGTCTTGGGTGTCCTTGGTTGTCCAAATCTTCCTCTAACGTCCATTGCCAGCGCCAATCAGCAACCTACCCCTGGTGAAGTTG GCTGTCTCTTCTTTGCTAAAGTCGGTGCTGGAACTTATATGCAATCGTTAGAAGGTGATTCAGTAGTGCAAGTGAATGTTACGGCTACTGAGAACTCAGA AGAAGCGTCCTTCTTTGAGTCATATGAAGCAGCACACTCCTTGCGTGGCTTAACCAGCTCTATTGCAGAGAAACTTGGTGTTAAGGCACCACCAGTTAGA ATTGATAGCCAGGCAAAATATGGTGCTCTTTCGAGGGGCGATGGGGCCATATACATGCGTTTTCCCCACAAAGGATACCGCGAGAAAATATGGGATCATG CTGCTGGTTGCATTGTTGTGACAGAAGCCGGTGGGTTGGTAACTGATGCTGCGGGGAATGAATTGGATTTTTCGAAGGGAAGATACTTGGATTTGGACAC AGGAATCATCTCCACTAATCCCAAATTGATGCCATTGCTCCTCAAGGCCGTGAGTGAAGCTAAGGACAGCAGCAGTTCTTCCCTGTGA
AA sequence Show only first row Show all	>Lus10015663 pacid=23147206 polypeptide=Lus10015663 locus=Lus10015663.g ID=Lus10015663.BGIv1.0 annot-version=v1.0 MSMAIMMRQAQGCCCHLNAINNCNITSFTYRHRTSSAPIAGVLTPSSTLSLSLRRRRRQPPSVSSSATSMSSLSYEKELLAAKKAVCLAARLCQARSQAV VSLVLQRELPSVPFSLVAEEDSGDLRNDSARDITARITELVNDTLSTDGSSSTLSVEQVLKAIDCGISEGGSTGRHWVLDPIDGTKGFVRGDQYAIALAL LDEGKVVLGVLGCPNLPLTSIASANQQPTPGEVGCLFFAKVGAGTYMQSLEGDSVVQVNVTATENSEEASFFESYEAAHSLRGLTSSIAEKLGVKAPPVR IDSQAKYGALSRGDGAIYMRFPHKGYREKIWDHAAGCIVVTEAGGLVTDAAGNELDFSKGRYLDLDTGIISTNPKLMPLLLKAVSEAKDSSSSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10015663 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	8.5	0.8504
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	11.3	0.8536
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	13.6	0.8300
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	16.4	0.8219
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	19.2	0.8431
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	20.9	0.8315
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	21.0	0.8106
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	25.5	0.8157
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	28.2	0.8262
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	31.7	0.8278

Compare expression of checked genes

Lus10015663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.