Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72650 333 / 7e-106 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 249 / 2e-74 MYB TRFL3 TRF-like 3 (.1.2) AT2G37025 95 / 1e-20 TRFL8 TRF-like 8 (.1.2) AT5G13820 56 / 5e-08 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G53790 55 / 8e-08 MYB TRFL4 TRF-like 4 (.1) AT1G07540 55 / 1e-07 MYB TRFL2 TRF-like 2 (.1) AT5G59430 54 / 2e-07 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G46590 54 / 2e-07 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT3G12560 54 / 3e-07 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G58340 49 / 6e-06 MYB myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037678 [exp] 1094 / 0 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2) Lus10013809 [exp] 86 / 2e-19 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 87 / 6e-18 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2) Lus10002704 [exp] 57 / 4e-08 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 57 / 5e-08 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 56 / 9e-08 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10010844 [exp] 55 / 2e-07 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10024385 [exp] 54 / 3e-07 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10020771 [exp] 52 / 1e-06 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170200 [exp] 472 / 2e-159 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 375 / 8e-122 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 99 / 1e-21 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.010G202400 [exp] 57 / 2e-08 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.001G241600 [exp] 56 / 5e-08 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.008G057300 [exp] 55 / 1e-07 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.006G086500 [exp] 54 / 3e-07 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.009G032000 [exp] 54 / 3e-07 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.006G147400 [exp] 48 / 9e-06 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 45 / 8e-05 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015664 pacid=23147223 polypeptide=Lus10015664 locus=Lus10015664.g ID=Lus10015664.BGIv1.0 annot-version=v1.0 ATGGTGAGTCCCCTCATGTTCCTCCCCCCGCCTTCAGCTGTGTCACCACTATTCGTTGTGGTTCTCGGCGATTGGGTCTCTAATCAGGTTGGAGTTGAGG GGAATGGAGAAGGGAAGCTGCTTGAGGAAAGTGAGGTTGAGAAACTTTGCTCTTCTTTGGCATCATCGCCTCACCACATTGTGGACCCCATTGTTTACAA GCTCGTCAGGGTGGAAGGAGATGGGAGATTCGTACCAGCAACAGATGATGAAGTGATGGAGGTAGCTGACCTGTTTCTGGATGACAACATTGATACAGAT TTTCTTGACATTGAACAGACTGTAGGATGCATCTCTGGCGGCGGAATGCATCAGCTAGGCAGCACAGGAGGTTTATTGCAAGCTGGAAACCAAGATTTTC ATCCAGATGAAATAAGTGTACAACCTCAGGAAACTGTCTCAGATTTTGCTCAAAGTATATGTGAAAGCTTCATTTCGGGATGTGAGGGTGCTAGAGATTT TCCAGATCCTCTTGAAAAGTTTAGCGAGGATGTGGGATTAAATCCTGTTGTTGATCCTTCCATGCCAGATTTCTCCAAGGTAAAGGGAGAAATATGCCTG GACGGTCTATCTATCAAAGAACTTCAGGAAACATTTAGGGCAACTTTTGGAAGAGAAACCTCTGTCAAGGATAAGCAGTGGCTTAAGAGAAGGATCGCCA TGGGATTGACTAATTCATGTGATGTTTCAGCCTCTAGTTTCACGATTAGAGATAATAAGTTAGTAGCCAATGGTGTAAGTAGCGATAACATGGTTGCTGT TATCGGTAGTGGTCAACTTCCTGAAGCAAACAGTTGTAATGAGAGACAGTTACCAAGTATTCAAAGCAGCGAGCAGAAGAATGAACAGGTTGTTTCTGAC GAAAGGTTGAGAGAAGGAGGCATGTGTGAGGACCACAAAGATGTAGACGATCACACTGAAGAGAGGGCTGCTAAACGAGTCCGGAAGCCAACAAAAAGAT ACATCGAGGAACTCTCAGAGACGGAATCCAAAGAGGCCATTAGTAGACTAATGGATGTGAATCCGAATTCTGGACCTGGACAACCATCGCCGAACTGTCA CATGAGACTTGAGAGGAATGTGTCTTTGGGTGGCAGAACTCTGATTATAAGGTTGGATTCCCTCGGTGGATATGAGATTCAGATTCCATGTGCTTCTCGT GTTCGTAGGAGCCGGCCAAGAAAAGATTTCATGACCCTTCTGAAATTCAATAGCATTGACGTGACAACAACAGTGGTACAAAAGGCCTTTGCAGCACACA TTGCTCAACCTCAGAATGAGAATATGAACATGGTTACGAAACCCCAATCAATTCCTGAACGGCCTCAGTCGCTACTTGTAGATGTAGCGGGTAAAGAGGA GCCAAAAAATGAAGATTCTTCCGGGGATTCAGATGGTAACATAACCACCGTGCCAACACCAAAAGGCGGATTTAGAAGGAAGCATCATCGAGCATGGGCT CTCGCGGAGGTTATCAAGCTAGTGGACGGTGTCTCCATGTATGGAGCCGGGAAGTGGTCGGAGATCAAACGCCTCTCGTTTGCATCATCTCCGTTTCGAA CCTCTGTCGATCTCAAAGACAAATGGCGAAATCTGCTGAAGGCCAGCTTTGCACAGGCACCCCCAGACAAAGGGATAAACATGCGGAAGAATGCTGCTGC ATCACCGATCCCTGAAACTATACTGTCGAGAGTGAGGAAGCTCGTGGAGATGCAGTCGCTGGTTCGTCCAGGTGGCAGCAACAAGGCGGCTGGCAACTCG CCCCACTGCACGGACAATGGACCCAAAAAGCAATCTGGGTATCTGTAA
AA sequence Show only first row Show all	>Lus10015664 pacid=23147223 polypeptide=Lus10015664 locus=Lus10015664.g ID=Lus10015664.BGIv1.0 annot-version=v1.0 MVSPLMFLPPPSAVSPLFVVVLGDWVSNQVGVEGNGEGKLLEESEVEKLCSSLASSPHHIVDPIVYKLVRVEGDGRFVPATDDEVMEVADLFLDDNIDTD FLDIEQTVGCISGGGMHQLGSTGGLLQAGNQDFHPDEISVQPQETVSDFAQSICESFISGCEGARDFPDPLEKFSEDVGLNPVVDPSMPDFSKVKGEICL DGLSIKELQETFRATFGRETSVKDKQWLKRRIAMGLTNSCDVSASSFTIRDNKLVANGVSSDNMVAVIGSGQLPEANSCNERQLPSIQSSEQKNEQVVSD ERLREGGMCEDHKDVDDHTEERAAKRVRKPTKRYIEELSETESKEAISRLMDVNPNSGPGQPSPNCHMRLERNVSLGGRTLIIRLDSLGGYEIQIPCASR VRRSRPRKDFMTLLKFNSIDVTTTVVQKAFAAHIAQPQNENMNMVTKPQSIPERPQSLLVDVAGKEEPKNEDSSGDSDGNITTVPTPKGGFRRKHHRAWA LAEVIKLVDGVSMYGAGKWSEIKRLSFASSPFRTSVDLKDKWRNLLKASFAQAPPDKGINMRKNAAASPIPETILSRVRKLVEMQSLVRPGGSNKAAGNS PHCTDNGPKKQSGYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	1.0	0.9409
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	3.5	0.8448
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	4.2	0.8388
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	4.2	0.8121
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	6.3	0.8123
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	6.5	0.8128
					Lus10039517 [exp]	7.5	0.7808
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	8.4	0.8393
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	8.5	0.8572
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	10.2	0.8465

Compare expression of checked genes

Lus10015664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.