Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50170 1060 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G03370 929 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT3G59660 106 / 2e-23 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G02120 54 / 6e-07 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT5G47710 46 / 2e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G18370 49 / 3e-05 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G22610 45 / 0.0004 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037679 [exp] 1970 / 0 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001915 [exp] 955 / 0 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 440 / 3e-138 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10025600 [exp] 88 / 2e-17 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10027067 [exp] 72 / 1e-12 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10042913 [exp] 57 / 6e-08 AT1G02120 483 / 2e-164 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10028209 [exp] 57 / 7e-08 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10009032 [exp] 55 / 4e-07 AT3G18370 907 / 0.0 C2 domain-containing protein (.1) Lus10009672 [exp] 55 / 4e-07 AT3G18370 840 / 0.0 C2 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083500 [exp] 1306 / 0 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 969 / 0 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.006G003200 [exp] 949 / 0 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.013G127000 [exp] 100 / 3e-21 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.014G047600 [exp] 60 / 8e-09 AT1G02120 533 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.015G046700 [exp] 59 / 2e-08 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.012G056000 [exp] 57 / 7e-08 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.006G004600 [exp] 50 / 1e-06 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 50 / 1e-06 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G137800 [exp] 50 / 8e-06 AT1G02120 459 / 6e-158 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10015665 pacid=23147238 polypeptide=Lus10015665 locus=Lus10015665.g ID=Lus10015665.BGIv1.0 annot-version=v1.0 ATGAAACTGTTCGTTTACATCCTGGAAGCTAGGGAGCTTCCGCCGGCGAGGGAAGAATCCTCCTCCTCCTACGTCGTCAAGCTCCGCCTCGGAAAGCGCA AGTTGAAGACTCGGATCCTACGAAACGCCGCCGCTGTTTGGAACGAGGAGTTTCTGTTCCAGCTTCATGACCCTGACTCCGACGAATTGATCGTCTCTGT CTACAGTCACGTCGGAGATGGGGGCCTGTTTTCCGGCGGTGAATTGGTCGGCCGCGTCTCCGTCCCGGTTTGTTCCGTATTGGCTGAGATTAATCAGTCG CTGCCGCCTACTTGGTTCCCGCTTCAGTTTCCCGGCTCCGGCAAACGCGTGCACGCTAACGGAGGCGACTGTGGGAAAATTTTGCTCTCAATTTCTGTAT ATGAAGAGGGAAATGATTCTCCTGACAACCACTTCCTTTCTGATGAGGATGTAAAAGAAACCGAAACCAAATCCGAGTCAGGTATGCACGTCTCTAAATC CCCACATCACAAGATACCAGGAGGGAAGAAGTTGATCAAAGCCATTGCCAACCGTCTGGAAAAGGTGTTTACCAAGCATCAAGAAGGCGGGGGATCACCG AGAACCGATGTATCCTCGGATATAACCAATGCTTCGGATTACGATGATTGTCTAGATGAACATCCATCATCAGCTGTTAGCTTTGAATCAGGTCTCCAGA TGATGGAGTCGAGAGAAGATAAACAGGACATGCCGAATGACCTTCATGGAGGTGTTCTTTTGGACCAGAAGTATCTGGTAGAGCCTTCTGATCTGAATAG GTTGCTTTTTGGACCTGGTTCGCAGTTCAGAAAGGATCTGGCTGACTTGCAAGGCACAAAAGATGTGGAAGAAGGGCCTTGGAGTTGGAAATCTGTTGGC ATGAGCTGTCTCAGTCGGACAGTTACCTATATGAAAGCCGCGTCGAAGCTGGTCAAGGCTGTTAAGGCCACGGAGGAGCAGTCTTATGTAAGAGTAAATG GATCGGAGTTTTGTGTTTCTGTTAGTGTCTTGACGCCGGATGTTCCATATGGTAATACATTCAGCGTTGAGTTACTGTACAAGATACTGCCCGGACCAGA ATTATCTTCAGGAGAAGAGTCTTGCCACCTTATTATCTCATGGGGTGTTAATTTTCACCATAGCACAATGATGAAAGGTATGATTGAAAGTGGAGCTAAA CAGGGATTGAAGGAGAGTTTTGTTCAGTTTGGCAGTCTATTAGCTCAGAATGTCAAGGTGCTGGATTCCGCGAGTTCTTCTTCCTCCGACAAGGAACATG TGCTTGCAAATTTGGAATCAGGACACGAGTCGGATTGGGAACTGGCACTGCACTACTTCTGCAATTTTACAGTTGTCTCCACCTTTATTATGGTTGTCTA TGTCCTGGTGCATATCTTACTCTGCGCTCGAAGTCAAATCCAAGGCCTGGAATTCTATGGACTTGATTTGCCAGATAGCTTTGGGCAGCTTGTTACTTGT GCTATCTTATTCATCCAGGTGGAACGTGTTTATAATATGGCAACTCATTTCGTCGAAGCAAGGTTACATCAAGGATCTGATCATGGGGTTAAATCACAAG GAGATGGATGGATTCTTACTGTTGCACTGATTGAAGGGACCAGTTTAGCGTCTATTGGTGCAACTGACGTCAGTGATCCTTACGTGGTTTTTACCTGCAA TGGCAGAACAAGAACAAGCTCTGTCAAGCTGCAAACTAACGACCCCCAGTGGAACGACGTACTTGAGTTTGATGCCATGGAAGAACCGCCTTCAGTTCTG GAAGTTGAAGTGTTTGATTTTGACGGTCCATTTGATCAGGCAACATCACTCGGGCATGCTGAGATCAACTTTTTGAAGCACACGTCTACAGAGTTGGCAG ATATGTGGGTGCCACTCGAGGGAAAGCTGGCTCAATCTTCTCAATCAAAGCTACACTTGAGAATCTTCTTGGACAACAACAATGGCGTTGAGACCATCAA AGAGTACTTAACAAAGATGGAAAGAGAGGTCGGGAAGAAGCTCAACCTGCGATCACCTCACAGGAACTCATCCTTCCAGAAGCTATTTGGGTTGCCTCCA GAAGAGTTCCTAATCAGCGACTTCACATGTCAACTGAAGAGAAAGATGCCTTTGCAGGGCAGACTGTTCTTATCTGCAAGGATTGTGGGGTTCTATTCCA ACTTATTTGGCCACAAGACTAAGTTCTTCTTCCTCTGGGAGGACATTGATGACATCCAAGTTCATCCACCTACGCTGTCTTCGGTAGGTAGCCCGATGCT TGTGATAGTGCTGAGGAAAGACAAGGGTACTGAAGCTCGGCAGTGGGCCAAGTCTCAAGATGAACATGGCAGGCTGGAGTTCTACTTACAGTCATTCGCC TCATTCGGTGCGGCCAGCAGGACTATTATGGCTTTGTGGAGAACAAGGACACTGACCCCTGACCAGAAAGCACTGATTGCTGAAGAGCAAGAGCAAGATC AAGGGGAAAGACAAGTCATGCTTGAGGACTCCACACCCATTGTGGATGTTGAAGATGCAAAAATGATAAGGATATACTCTGAAGAACTTCCAATTAGTAT AACATCACTCTTGGAGCTGTTTGAAGGAGGGAAAATGGAGCACATAGTCATGGGGAAATCGGGATGCCTCAACTATGCAACAACCCCCTGGGAATCCGTG AAACAAGGTCTCGAGGAACGGCATGTCTCGTACAGGTTCAACCGCAACGTGTCCATCTTTGAAGGGGAGGTTAGTTGCACGCAGCAGAAATCGGCCATGA CTGATGGAGGAGAAGGGTGGATTGTGAATGAAGTCATGGTGCTTCATGATGTACCATTCTGCGATCACTTCCATGTGATCTTCAGGTACCTTTTCGAGAA ATCTGCCCTTTCTCATAGTGCCTGTAAATGTGAAGTTTATATAGGGATCACTTGGCTCAAAGCAACCAAGTTCCAGCAGAGGATCACCAGGAACATAACT GATAAGTTCTCTCAGAGATTGAAGGAGATTTTCGAACTGGTTGAGAGAGAGATCCTCTTTGCGATTCAACAAGGTACTCCACTTTGA
AA sequence Show only first row Show all	>Lus10015665 pacid=23147238 polypeptide=Lus10015665 locus=Lus10015665.g ID=Lus10015665.BGIv1.0 annot-version=v1.0 MKLFVYILEARELPPAREESSSSYVVKLRLGKRKLKTRILRNAAAVWNEEFLFQLHDPDSDELIVSVYSHVGDGGLFSGGELVGRVSVPVCSVLAEINQS LPPTWFPLQFPGSGKRVHANGGDCGKILLSISVYEEGNDSPDNHFLSDEDVKETETKSESGMHVSKSPHHKIPGGKKLIKAIANRLEKVFTKHQEGGGSP RTDVSSDITNASDYDDCLDEHPSSAVSFESGLQMMESREDKQDMPNDLHGGVLLDQKYLVEPSDLNRLLFGPGSQFRKDLADLQGTKDVEEGPWSWKSVG MSCLSRTVTYMKAASKLVKAVKATEEQSYVRVNGSEFCVSVSVLTPDVPYGNTFSVELLYKILPGPELSSGEESCHLIISWGVNFHHSTMMKGMIESGAK QGLKESFVQFGSLLAQNVKVLDSASSSSSDKEHVLANLESGHESDWELALHYFCNFTVVSTFIMVVYVLVHILLCARSQIQGLEFYGLDLPDSFGQLVTC AILFIQVERVYNMATHFVEARLHQGSDHGVKSQGDGWILTVALIEGTSLASIGATDVSDPYVVFTCNGRTRTSSVKLQTNDPQWNDVLEFDAMEEPPSVL EVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVPLEGKLAQSSQSKLHLRIFLDNNNGVETIKEYLTKMEREVGKKLNLRSPHRNSSFQKLFGLPP EEFLISDFTCQLKRKMPLQGRLFLSARIVGFYSNLFGHKTKFFFLWEDIDDIQVHPPTLSSVGSPMLVIVLRKDKGTEARQWAKSQDEHGRLEFYLQSFA SFGAASRTIMALWRTRTLTPDQKALIAEEQEQDQGERQVMLEDSTPIVDVEDAKMIRIYSEELPISITSLLELFEGGKMEHIVMGKSGCLNYATTPWESV KQGLEERHVSYRFNRNVSIFEGEVSCTQQKSAMTDGGEGWIVNEVMVLHDVPFCDHFHVIFRYLFEKSALSHSACKCEVYIGITWLKATKFQQRITRNIT DKFSQRLKEIFELVEREILFAIQQGTPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50170			C2 calcium/lipid-binding and G...		Lus10015665 [exp]	0	1
AT5G50170			C2 calcium/lipid-binding and G...		Lus10037679 [exp]	1.0	0.8131
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	2.0	0.7465
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	4.9	0.7186
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	7.3	0.6681
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	8.5	0.7661
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	11.0	0.7927
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	14.0	0.7356
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	15.7	0.7440
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	23.2	0.7384
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10015992 [exp]	25.0	0.6038

Compare expression of checked genes

Lus10015665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.