Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17420 1345 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 1335 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 881 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 749 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 734 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 714 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008113 [exp] 1557 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 1551 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 920 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031810 [exp] 804 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 780 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 780 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 773 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 767 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 741 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167700 [exp] 1457 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.003G067600 [exp] 1063 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G057100 [exp] 1001 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 972 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G015500 [exp] 858 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 856 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 850 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 831 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 790 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.013G022000 [exp] 740 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10015666 pacid=23147279 polypeptide=Lus10015666 locus=Lus10015666.g ID=Lus10015666.BGIv1.0 annot-version=v1.0 ATGGGTTTGGCCAAAGACTTCATGGCCGCCACTTCTTTACTCGACTCGTCGGCCTCGACGAATCGCAACTCAATCTCGGTCAGAAAACCATCTTTACTGA TGGTTCCTCTGCATCCTAAAAGGAGGGGAAGTTTCCGAGGACCAATCGTGGCAGCAATCAGCGAGGATTTACTAAAGAAGAACAACACCACCGGCGGTAG CACCAGCAGCAGTCTGACGGCGAAGGAGAATCCGCCGCCGGCGAAGTTCACAGTCAGAGCAGTGGTGACTGTAAAGAACAAACATAAAGACGATCTAAAA GAGACTCTCATCAAGCAGCTGGATTCCCTCACTGATCGAATTGGCAGAAACGTCTCCTTGGAACTCATCAGCACAGAACTGGATCCAAAAACGAAGGCGC TGAAGAGGAGTAACGGAGCGGTGTTGAAGGATTGGTCAAGGAAATCGAATGTGAAGGCTGAGAAGGTTCACTACTCGGCTGATTTCGTTCTGGACTCGGA TTTTGGGGATCCTGGTGCTATACTGATAAGCAATAAGCATCAGAATGAGTTCTTCCTGGAAAGTATTACACTTGAAGGGTTTGATTCCGGTCCGGTTCAT TTTCCGAGCAATTCGTGGGTTCAGTCTGCTAAACACCATCCTGCTAAGAGGATCTTCTTCTCTAATCAGCCATATCTGCCAAGTGAGACACCACCTGGGA TTAGAGCTTTGAGGGAAAGAGAGCTTAGTGATTTAAGAGGGAGTGGAAAGGGAATCAGAAAGCTATCTGATAGAATCTATGACTATGATATCTACAATGA TCTTGGGAATCCAGACAAGGGGATTGACTATGCTAGACCAGCACTTGGTGGTGACCAAATCCCTTATCCGAGACGGTGTCGTACTGGCCGCGTCCCGACC TATATTGATTCCAATGCTGAGAGCCGTGTGGAGAAGCCAACACCAATGTACGTGCCTAGAGATGAACAATTCGAGGAGTCCAAGAAGAAATCATTCTCTT ATGGGAGGCTTAAGGCAGTTCTCCATACTCTAGTTCCATCTCTCAAGGCCAGCATTTCTGCCGAGAATCGCGATTTTAGTGCCTTCGCCGATATCGACAT CCTCTACAAAGAAGGCCTACTTCTTAAAGTTGGGATTCAAGATGAAATCTGGAGGCAGCTACCTTTGCCAAAAGTGGTTACCGAGATCACTGAGTCCAGT GAAGGACTTCTCAGATATGACACTCCTAAGATTCTGTCCAAGGACAAGTTTGCATGGTTGCGAGATGACGAATTTGCTCGCCAAGCGATCGCTGGTGTCA ATCCAGTCACCATTGAACGACTCGGTGAATTCCCACCGAAGAGCAACCTGGATCCTGAGACATATGGTCCACTGGAATCTGCTCTTCAGGAAGAACACAT CCTGGGACAACTCAATGGCATGTCTGTTCAACAGGCCATGGAGGAGAACAAGCTGTTTATAGTGGATTACCATGATGTCTATCTCCCATTTCTGAACCGG ATTAACGCCCTTGACGGAAGGAATACGTATGCTACACGTACCGTGTTTTTCTTAACATCACAGGGCACACTTAAACCCATTGCAATAGAGCTGAGCCTGC CACCAGCAGGGCCAAATTCAAGATCCAAGCGTGTCATCACGCCTCCAGTTGACGCAACCAGCAGTTGGATTTGGCAACTTGCAAAGGCTCATGTTTGCTC TAATGATGCTGGTGTTCATCAGCTAGTTAACCACTGGTTGCGAACACATGCCTGCATGGAACCGTTCATACTCGCAGCACACAGGCAACTGAGTGCAATG CATCCGATTTTCAAGCTTCTGGATCCTCACATGAGGTACACGCTCGAGATCAACGCACTTGCCCGACAGAGCTTGATCAATGCGGATGGTGTTATTGAAT CTTGTTTCACTCCTGGCCGGTACTGTTCCGAGATTAGCGCTGCTGCGTATAAGAACTTTTGGCGGTTCGACCAGGAAGGCCTCCCTGCTGATCTCATCCG AAGGGGAATGGCAGTACCAGACCCTACACAGCCACATGGTCTGAAGCTTCTACTTGAGGATTATCCATATGCTCAAGACGGACTGCTGATATGGTTCGCC ATCGAGAATTGGGTCCGGACCTACGTAAACCATTACTATCCTAGCTCAAGCATGATCCCCAATGACACGGAGCTACAAGCGTGGTACGCTGAGTCCATCA ATGTAGGTCACGCCGATCTTCGCAATGCAGATTGGTGGCCGAAATTAGAAGACAACGTCGATCTCGTCTCGATCCTCACGACAATCATCTGGATAGCATC CGCACAGCACGCTGCACTCAACTTCGGACAGTACCCTTACGGAGGGTACGTGCCCAACAGACCACCCTTAATGAGAAGACACATCCCCCATCAGAACGAT CCCGAGTACGAGAACTTCCAAGCTGACCCGCAGAAATACTTCCTATCGGCACTGCCGAGCCTTCTTCAAGCGACAAAGTTCATGGCCGTGGTGGACACGC TGTCGACTCACTCGCCGGACGAGGAGTACCTGGGGGAGAGACAACAGCCGTCGGTCTGGTCAGGCGATGCAGAAATAGTCGAGGCCTTCTACGAGTTCTC GGCTGAGATTCAACGGATAGAGAAGGAAATTGAGAAGAGGAACAGCGATCCTAGCTTGAAGAACAGGTGTGGTGCCGGCGTTTTGCCATATGAGCTGCTA GCACCTAGCTCCCAGCCTGGGGTGACATGTAGAGGAGTACCAAATAGTGTGTCCATATAA
AA sequence Show only first row Show all	>Lus10015666 pacid=23147279 polypeptide=Lus10015666 locus=Lus10015666.g ID=Lus10015666.BGIv1.0 annot-version=v1.0 MGLAKDFMAATSLLDSSASTNRNSISVRKPSLLMVPLHPKRRGSFRGPIVAAISEDLLKKNNTTGGSTSSSLTAKENPPPAKFTVRAVVTVKNKHKDDLK ETLIKQLDSLTDRIGRNVSLELISTELDPKTKALKRSNGAVLKDWSRKSNVKAEKVHYSADFVLDSDFGDPGAILISNKHQNEFFLESITLEGFDSGPVH FPSNSWVQSAKHHPAKRIFFSNQPYLPSETPPGIRALRERELSDLRGSGKGIRKLSDRIYDYDIYNDLGNPDKGIDYARPALGGDQIPYPRRCRTGRVPT YIDSNAESRVEKPTPMYVPRDEQFEESKKKSFSYGRLKAVLHTLVPSLKASISAENRDFSAFADIDILYKEGLLLKVGIQDEIWRQLPLPKVVTEITESS EGLLRYDTPKILSKDKFAWLRDDEFARQAIAGVNPVTIERLGEFPPKSNLDPETYGPLESALQEEHILGQLNGMSVQQAMEENKLFIVDYHDVYLPFLNR INALDGRNTYATRTVFFLTSQGTLKPIAIELSLPPAGPNSRSKRVITPPVDATSSWIWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAM HPIFKLLDPHMRYTLEINALARQSLINADGVIESCFTPGRYCSEISAAAYKNFWRFDQEGLPADLIRRGMAVPDPTQPHGLKLLLEDYPYAQDGLLIWFA IENWVRTYVNHYYPSSSMIPNDTELQAWYAESINVGHADLRNADWWPKLEDNVDLVSILTTIIWIASAQHAALNFGQYPYGGYVPNRPPLMRRHIPHQND PEYENFQADPQKYFLSALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSVWSGDAEIVEAFYEFSAEIQRIEKEIEKRNSDPSLKNRCGAGVLPYELL APSSQPGVTCRGVPNSVSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	0	1
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	1.4	0.9224
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	2.0	0.9025
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10041548 [exp]	3.5	0.8504
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	4.9	0.8665
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	5.2	0.8878
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	5.7	0.8834
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	5.9	0.8692
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	6.7	0.8635
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	7.4	0.8554
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	7.7	0.8733

Compare expression of checked genes

Lus10015666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.