Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20570 192 / 6e-65 HRT1, ROC1, RBX1, ATRBX1 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) AT3G42830 174 / 9e-58 RING/U-box superfamily protein (.1) AT3G05870 69 / 2e-16 APC11 anaphase-promoting complex/cyclosome 11 (.1.2) AT3G47180 40 / 8e-05 RING/U-box superfamily protein (.1) AT4G12140 39 / 0.0001 RING/U-box superfamily protein (.1) AT5G40250 40 / 0.0002 RING/U-box superfamily protein (.1) AT3G16090 40 / 0.0002 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT5G17600 40 / 0.0002 RING/U-box superfamily protein (.1) AT1G65040 39 / 0.0002 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G03550 39 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013153 [exp] 192 / 5e-65 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10037680 [exp] 134 / 2e-42 AT5G20570 122 / 9e-38 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10008115 [exp] 117 / 2e-35 AT5G20570 129 / 2e-40 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10015126 [exp] 67 / 6e-15 AT3G05870 156 / 2e-50 anaphase-promoting complex/cyclosome 11 (.1.2) Lus10031549 [exp] 64 / 2e-13 AT3G05870 158 / 6e-50 anaphase-promoting complex/cyclosome 11 (.1.2) Lus10040359 [exp] 39 / 0.0004 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 39 / 0.0005 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10034587 [exp] 38 / 0.0006 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10032161 [exp] 38 / 0.001 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141300 [exp] 192 / 8e-65 AT5G20570 209 / 1e-71 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.001G167400 [exp] 190 / 4e-64 AT5G20570 203 / 3e-69 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.003G067100 [exp] 189 / 6e-64 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.017G037701 [exp] 47 / 2e-08 AT3G05870 123 / 5e-39 anaphase-promoting complex/cyclosome 11 (.1.2) Potri.001G322600 [exp] 43 / 7e-06 AT5G08139 71 / 5e-14 RING/U-box superfamily protein (.1) Potri.002G140600 [exp] 43 / 1e-05 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1) Potri.006G239500 [exp] 39 / 0.0003 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 38 / 0.0005 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 38 / 0.0006 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 38 / 0.0007 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015667 pacid=23147194 polypeptide=Lus10015667 locus=Lus10015667.g ID=Lus10015667.BGIv1.0 annot-version=v1.0 ATGGACGTCGACGTTGCTATGGTACCGGCCGGCGAAGGAAGCTCCAGCGCTCCCGGACCTTCGACCTGCTGCAAGAAGGCCAAGAGCTTCGAGATAAAAA AGTGGAATGCCGTCTCTCTTTGGGCATGGGATATTGTGGTGGATAACTGCGCTATTTGCAGGAATCATATTATGGATCTTTGCATTGAGTGCCAAGCTAA TCAAGCGAGTGCCACTAGCGAGGAGTGTACTGTTGCTTGGGGTGTTTGTAACCATGCTTTCCACTTCCACTGCATTAGCCGTTGGTTGAAAACCCGCCAA GTCTGCCCTCTTGATAATAGCGAATGGGAGTTCCAGAAGTACGGTCACTAG
AA sequence Show only first row Show all	>Lus10015667 pacid=23147194 polypeptide=Lus10015667 locus=Lus10015667.g ID=Lus10015667.BGIv1.0 annot-version=v1.0 MDVDVAMVPAGEGSSSAPGPSTCCKKAKSFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ VCPLDNSEWEFQKYGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	0	1
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	1.0	0.9423
AT4G29330		DER1	DERLIN-1 (.1)		Lus10012934 [exp]	1.7	0.9282
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	2.0	0.9323
AT1G05205			unknown protein		Lus10039669 [exp]	4.2	0.9183
					Lus10022462 [exp]	4.4	0.8982
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010296 [exp]	4.5	0.8981
AT1G11240			unknown protein		Lus10011247 [exp]	6.2	0.9052
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	9.2	0.9001
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	9.5	0.8894
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	12.2	0.9036

Compare expression of checked genes

Lus10015667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.