Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14070 447 / 2e-153 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G54115 442 / 2e-151 ATCCX4 cation calcium exchanger 4 (.1) AT5G17860 236 / 2e-72 CAX7 calcium exchanger 7 (.1) AT5G17850 192 / 5e-56 Sodium/calcium exchanger family protein (.1) AT1G08960 112 / 7e-27 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037681 [exp] 694 / 0 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 689 / 0 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10013635 [exp] 248 / 9e-77 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 244 / 3e-75 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013634 [exp] 206 / 8e-61 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 197 / 1e-58 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10020318 [exp] 200 / 3e-58 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 190 / 1e-54 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10029938 [exp] 122 / 4e-30 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066900 [exp] 516 / 2e-180 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 481 / 7e-167 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G065800 [exp] 254 / 2e-79 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 244 / 2e-75 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.013G065900 [exp] 237 / 8e-73 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 213 / 2e-64 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G025100 [exp] 124 / 5e-31 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10015668 pacid=23147179 polypeptide=Lus10015668 locus=Lus10015668.g ID=Lus10015668.BGIv1.0 annot-version=v1.0 ATGGTCGGTAAAGTGACCGTGACTGCTGCAATCGCGTTCGTACTGATTTATGTGGTGTATGCGTTCTTCGTTGCTGCCAATGAACTTTTGAGGAAGCATG CTCAGAGGCTGAAGCTGGATTCCGTTACGCCGCTCATGCCGGTTAGAGGAAGTATATTTTCGCAGGGGAATGAAGAAGATGTTACTGTGTACAGTTCTCT GCTCGACGTCGAGACTGAGAATGACATGCCTGATCAACAACCACCTTCTCTCCCGTCGTGGATGTGGGCTTCTAATGTGGCGATATACTCGAACCACTCG TCGAAGCTGGATGAGGAGAGATCGTCCCTTTGGGGATGGAACGACGAGGGGGGTTCGGAAATGAGGAAATGTTCATTCTCGTGTTCGAGATTGTTTACCA TCATGGAGATTCCGTTAACGATTCCCCGACGGCTTACGATCCCATTAGTGAACGACGAAACTTGGTCGAAGCCCTATGCAGTTAGCAGTGCTGCATTGGC TCCCGTTCTGGTTTCGTATCTTTGGAGTATGCAAGATGATCTGTCTCCCACGAGCAAAACCGTAGCTTACATTATTGGTCTTGGACTCGGTTTCTCACTC GGTATCCTTGCTTACCAGCATACATTGTCTGATCACCCTCCTCGAAAGTTTATGCTCGCCTGGGTTCTAGGCGGGTTTGTGATGAGCATCACTTGGTTCT ACATGATAGCCAACGAGCTCGTTTCCTTACTGGTTGCATTCGGGACATTGCTGGGAGTTAATCCATCGATTCTGGGACTAACAGTACTGGCATGGGGAAA CTCAATGGGGGACTTGGTATCAAACGTTGCCTTGGCGATGAACGGTGGCGACAGCTTGCAGATCGCAATGTCTGGATGCTACGCAGGTCCTATGTTCAAT ACCCTTATCGGTTTGGGAGCCTCAATGCTGTTGGGCGCGTGGTCGAGCAGCAACAGTACGCACGTGATCCCTCACGACAAGTCGTTGTTCTTGACCATAG CGTTTCTCGTGTCCGGGTTGTTGTGGGCTCTGGTCGTGTTGCCACTGAACAATATGCGACCGAACAAGATGTTGGGTTTCGGGCTGATAATTATGTATCT GGTTTTTCTTTCGGTTCGGTTAGCTACTGCCACTGGCTTTTCAGTGAGCTGA
AA sequence Show only first row Show all	>Lus10015668 pacid=23147179 polypeptide=Lus10015668 locus=Lus10015668.g ID=Lus10015668.BGIv1.0 annot-version=v1.0 MVGKVTVTAAIAFVLIYVVYAFFVAANELLRKHAQRLKLDSVTPLMPVRGSIFSQGNEEDVTVYSSLLDVETENDMPDQQPPSLPSWMWASNVAIYSNHS SKLDEERSSLWGWNDEGGSEMRKCSFSCSRLFTIMEIPLTIPRRLTIPLVNDETWSKPYAVSSAALAPVLVSYLWSMQDDLSPTSKTVAYIIGLGLGFSL GILAYQHTLSDHPPRKFMLAWVLGGFVMSITWFYMIANELVSLLVAFGTLLGVNPSILGLTVLAWGNSMGDLVSNVALAMNGGDSLQIAMSGCYAGPMFN TLIGLGASMLLGAWSSSNSTHVIPHDKSLFLTIAFLVSGLLWALVVLPLNNMRPNKMLGFGLIIMYLVFLSVRLATATGFSVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	0	1
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	1.7	0.9174
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	1.7	0.8721
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	2.2	0.8513
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	3.5	0.8866
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	5.5	0.8493
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	7.2	0.8417
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	10.6	0.8658
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	10.9	0.8340
AT2G35330			RING/U-box superfamily protein...		Lus10000899 [exp]	11.3	0.8200
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	11.6	0.8496

Compare expression of checked genes

Lus10015668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.