Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54115 197 / 5e-59 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 192 / 2e-57 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT5G17860 102 / 6e-25 CAX7 calcium exchanger 7 (.1) AT5G17850 92 / 3e-21 Sodium/calcium exchanger family protein (.1) AT1G08960 51 / 3e-07 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037681 [exp] 393 / 8e-135 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 393 / 6e-126 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10013635 [exp] 101 / 2e-24 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 94 / 8e-22 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10020318 [exp] 82 / 1e-17 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10013634 [exp] 77 / 7e-16 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 72 / 4e-14 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10029938 [exp] 54 / 4e-08 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Lus10004469 [exp] 47 / 9e-06 AT1G08960 642 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066900 [exp] 243 / 1e-76 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 237 / 4e-74 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G065800 [exp] 124 / 2e-32 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 117 / 3e-30 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.013G065900 [exp] 92 / 4e-21 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 62 / 5e-11 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G025100 [exp] 56 / 1e-08 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10015669 pacid=23147189 polypeptide=Lus10015669 locus=Lus10015669.g ID=Lus10015669.BGIv1.0 annot-version=v1.0 ATGGATGTTCCCAGCTGGTCGAATGGTGGCAGAACCCCTAAATTGAGGGGAGTTTTCAACGGATTGTGTGCGTTGATATTCGTCATCTTGTTGTACGATC GTGGAGGTCTGATCAGGAAAGTTCCTGGATTTGGTGATGGGATGAATGGGGTTGAACATATTCGTCGGCAGATGATTGAAGTTGGTGCGAATTCGTCGAG TTCTGGAAACAATTTGGATATGATGAAGAGGCCGATTGAATGTAGAGAAGTGGTTTTTCATAAGGGATATGCTGATGAATGTACCTTCTTGAAAGCGAAT CCGCAATGTTTCTCCGACGGAGGCTTCTTCGATTACGTCAATTTCTTGTATTGTGACTGTGGCAACTTCAGATGGTTGGGATTTATTGTGCTGGGAATCT GGCTTGCTGCTTTGTTTTATTTGTTGGGGAACACGGCCGCAGATTACTTCTGTGGCTCGTTGGAGAAGTTGTCGAGTCTTTTGAAGTTGCCCCCGACTGT AGCTGGTGTCGCCCTTCTACCGTTGGGGAACGGGGCACCCGATGTGTTTGCAAGTATCGCTGCATTTCTTGGAGAGGATTCTGGAGATGTCGGTCTTAAT AGTGTGTTGGGTGGTGCTGTGTTTGTAACCTCTGTTGTTGTCGGGGCTGTTTCGTTATGTGTGGTGGAGAAGGATGTGCAGATCGATCGGAAATGCTTTC AGGGATATATGTTTCTTCCTCTTTAG
AA sequence Show only first row Show all	>Lus10015669 pacid=23147189 polypeptide=Lus10015669 locus=Lus10015669.g ID=Lus10015669.BGIv1.0 annot-version=v1.0 MDVPSWSNGGRTPKLRGVFNGLCALIFVILLYDRGGLIRKVPGFGDGMNGVEHIRRQMIEVGANSSSSGNNLDMMKRPIECREVVFHKGYADECTFLKAN PQCFSDGGFFDYVNFLYCDCGNFRWLGFIVLGIWLAALFYLLGNTAADYFCGSLEKLSSLLKLPPTVAGVALLPLGNGAPDVFASIAAFLGEDSGDVGLN SVLGGAVFVTSVVVGAVSLCVVEKDVQIDRKCFQGYMFLPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015669 [exp]	0	1
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	2.8	0.8707
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	9.3	0.8365
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	9.7	0.8609
AT4G33640			unknown protein		Lus10007087 [exp]	19.2	0.8235
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	24.7	0.8124
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	29.0	0.7841
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	29.3	0.7731
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10032290 [exp]	29.5	0.8118
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	30.7	0.7716
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	30.9	0.8123

Compare expression of checked genes

Lus10015669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.