Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72510 139 / 8e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT2G09970 125 / 3e-37 Protein of unknown function (DUF1677) (.1) AT5G20670 101 / 6e-28 Protein of unknown function (DUF1677) (.1) AT3G22540 92 / 4e-25 Protein of unknown function (DUF1677) (.1) AT4G14819 88 / 2e-23 Protein of unknown function (DUF1677) (.1) AT1G79770 86 / 9e-22 Protein of unknown function (DUF1677) (.1) AT5G25840 85 / 3e-21 Protein of unknown function (DUF1677) (.1) AT1G54095 81 / 5e-20 Protein of unknown function (DUF1677) (.1) AT2G25780 73 / 7e-17 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037683 [exp] 266 / 1e-92 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10008118 [exp] 167 / 1e-53 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10013156 [exp] 159 / 1e-50 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10011427 [exp] 84 / 6e-21 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10006044 [exp] 83 / 1e-20 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10000571 [exp] 83 / 2e-20 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1) Lus10006107 [exp] 81 / 2e-20 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10010564 [exp] 81 / 4e-20 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1) Lus10037569 [exp] 80 / 2e-19 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166900 [exp] 162 / 6e-52 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 156 / 2e-49 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G219100 [exp] 117 / 1e-34 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 114 / 5e-33 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1) Potri.001G188700 [exp] 100 / 4e-27 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.003G050200 [exp] 92 / 6e-24 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 89 / 2e-23 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.006G237300 [exp] 88 / 1e-22 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 84 / 1e-21 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.015G031700 [exp] 81 / 8e-21 AT4G14819 75 / 5e-19 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10015670 pacid=23147263 polypeptide=Lus10015670 locus=Lus10015670.g ID=Lus10015670.BGIv1.0 annot-version=v1.0 ATGTCAACAACCATCTTAAGCGACGCATTAGTGGTGGAATCCCAACCGGCACCGGCAAAGGTGGAATCGGCAAAGTGCGACTGCTGCGGATTGACGGAGG AATGTACGTCGGAGTACATAGAGAAGGTGAAGGAGAGGTACAATGGGAGATGGGTATGCGGACTATGCGACGAAGCAGTGAAAACAGATCAAGAAAGACT TATAGTAACCAGAGAGGAAGCTTTGACTAGCCACATTAACTTCTGCAAGAAGTTTGCGGCTTTGTCATCGGAGACTGATAATCCGACCCTGCATTTGATC TCCGCGATGAAGCGAATCCTTCGAAGAAGCTTGGATTCACCTCCTCGAGGTGGGATGAGGTCAACTCCCGATAGTCCCACGACAAAATCTGTGGAGAAAC TCTCTAGGTCCGAGAGTTGTTTCTCTACCTTATCCCATTGA
AA sequence Show only first row Show all	>Lus10015670 pacid=23147263 polypeptide=Lus10015670 locus=Lus10015670.g ID=Lus10015670.BGIv1.0 annot-version=v1.0 MSTTILSDALVVESQPAPAKVESAKCDCCGLTEECTSEYIEKVKERYNGRWVCGLCDEAVKTDQERLIVTREEALTSHINFCKKFAALSSETDNPTLHLI SAMKRILRRSLDSPPRGGMRSTPDSPTTKSVEKLSRSESCFSTLSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72510			Protein of unknown function (D...		Lus10015670 [exp]	0	1
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10019791 [exp]	9.5	0.9084
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	10.1	0.8909
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	12.2	0.9171
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	12.8	0.9079
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10006527 [exp]	13.0	0.9116
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	13.4	0.9233
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	21.3	0.9117
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	23.9	0.9161
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10025494 [exp]	26.5	0.9022
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	26.6	0.9170

Compare expression of checked genes

Lus10015670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.