Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28450 220 / 7e-69 nucleotide binding;protein binding (.1) AT5G64730 44 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 43 / 0.0001 WD-40 repeat family protein / notchless protein, putative (.1) AT5G25150 43 / 0.0002 TAF5 TBP-associated factor 5 (.1) AT3G49660 42 / 0.0003 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 40 / 0.001 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037378 [exp] 351 / 6e-120 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1) Lus10037684 [exp] 122 / 3e-31 AT3G14120 1545 / 0.0 unknown protein Lus10004167 [exp] 54 / 7e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 50 / 1e-06 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10005074 [exp] 45 / 3e-05 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10007449 [exp] 44 / 7e-05 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10024447 [exp] 44 / 8e-05 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10039597 [exp] 43 / 0.0002 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10002090 [exp] 42 / 0.0002 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014700 [exp] 239 / 1e-76 AT4G28450 798 / 0.0 nucleotide binding;protein binding (.1) Potri.007G137300 [exp] 231 / 2e-73 AT4G28450 794 / 0.0 nucleotide binding;protein binding (.1) Potri.006G263400 [exp] 51 / 3e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 45 / 4e-05 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.013G116900 [exp] 45 / 4e-05 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.019G087200 [exp] 44 / 5e-05 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G045800 [exp] 43 / 0.0002 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 42 / 0.0004 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 42 / 0.0004 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G112500 [exp] 41 / 0.0009 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04158 [flax] [poplar] Sof1 Sof1-like domain CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10015673 pacid=23147262 polypeptide=Lus10015673 locus=Lus10015673.g ID=Lus10015673.BGIv1.0 annot-version=v1.0 ATGCTGTGGCTAGTTAGCTCCCATTGTCAGTTTCCTGGTTACCAAGGTGCCGTAAAAGGTTTAACAGTATGCACCGATGGAAGCACCCTGATATCCTGCG GAACTGATTGCACTGTTAGGCTTTGGAGTGTACCGGTAGCTTCCATCATGGGATTAGATGACGCCTCTAATAAGTCAGTTGAGGCAAAGGCAGTATATGT GGGAAAGAATGCTTCTTTGGCTGTTGATCATCAGTGGGGTGGTGACCTCTTCGCCACAACTGGTGCTCGAGTTGAAATTTGGAATCACAGCAGGGAACAG ACAGTTATCTCTGTCCGATTTAATCCCGGAGAGCTAAATATTATGGCCACATCAGCTAGTGACCGCAGGATAGCACTATATGACTCCTGTAAGGAAAATT ATCATGCAGACTACTCACCAACTGGACGGGATTTTGTTACCGGATCTTATGATAGAACAGTTAGTATTTTCTCATCTATGGCGGTCATAGTCGGGAAATC TATCACACAGAGAATGCGAAGGGTATTCTGTGTCAATTTTAGCTGCGATGCCAGTTATGTTATTTCAGGGAGTGACGACACTAACCTTAGGGTGTGGAAA GCTAAAGCATCGGAGCAGCCGGGAGTTTTGCTTCCAAGGGAACAGAAACAGCACGAATACCTGGAAGCTCTCCTGAAACGTTATTGCTATCTTGCTGAAG TCAAAAGAATAGTGAGGCATAGGCATCTGCCGAAATCGGTAGGGTTTAGAGTCTCTGTTTTGGCTGGAGCTTGGCCAGCTGCTGTTTATTCTTTTAGCAG TTCTGGAAGTTTATCACCTTCTTGA
AA sequence Show only first row Show all	>Lus10015673 pacid=23147262 polypeptide=Lus10015673 locus=Lus10015673.g ID=Lus10015673.BGIv1.0 annot-version=v1.0 MLWLVSSHCQFPGYQGAVKGLTVCTDGSTLISCGTDCTVRLWSVPVASIMGLDDASNKSVEAKAVYVGKNASLAVDHQWGGDLFATTGARVEIWNHSREQ TVISVRFNPGELNIMATSASDRRIALYDSCKENYHADYSPTGRDFVTGSYDRTVSIFSSMAVIVGKSITQRMRRVFCVNFSCDASYVISGSDDTNLRVWK AKASEQPGVLLPREQKQHEYLEALLKRYCYLAEVKRIVRHRHLPKSVGFRVSVLAGAWPAAVYSFSSSGSLSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	0	1
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	1.0	0.7668
					Lus10022247 [exp]	7.6	0.6618
AT5G17620			unknown protein		Lus10001340 [exp]	10.1	0.7623
AT1G63610			unknown protein		Lus10016008 [exp]	10.4	0.7235
					Lus10039434 [exp]	11.2	0.6906
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	11.6	0.7158
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	13.0	0.6556
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	14.3	0.6335
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	15.0	0.6682
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	15.8	0.7326

Compare expression of checked genes

Lus10015673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.