Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015671 [exp] 101 / 2e-25 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015674 pacid=23147261 polypeptide=Lus10015674 locus=Lus10015674.g ID=Lus10015674.BGIv1.0 annot-version=v1.0 ATGGAGGATAATCCGATCGCCAATTCGATGTCTGCCGTCGTTGATCATACCACTTTTTCCGATCCTAGCGCAGATTCTAGATCTGGGTATCAGGATGATA AGATCGGAGATCTGAGTTCTCACCCCGTGGGTTCGCTTCATCTTACGAAGAAGATAAAGACGGAAGAAGAGAAGACGGAAGGTGAGAAGATGGAAGTGGA TGTGGAGGAGAAGAAGAAGAAGGTGTATTACAGTGCCACGGGGTGCAGATTTTGCAAAGAACTAGCCACAAGGGAGTTTAAAGCCATGCCTGATGATGAT GACTATGGATGTGGATACTTGAATGACGACCCAGAACTAAAGCTACGGGTGATCAACTATCTCAGGTCGAAATACGAGAGCGGTGGTTTCGATATTGAAT GCCTTCCTGATGGTTTCTTTGGTGGAATATACAACCGTGATCATTTTTTTCCGTATTTCGAAGACGCAGTTGAAGCCTCAGGTCCAGCCTGCATCGAGGA TTATAATGCGAAAAAGACCAAGAAATTAGAGTTCAAAAAGACTATAAATGCAACTGGAACACTTGCTAAGAATATCGTACTATACCTGACATTTGAAGCC ATGGATCCTGAGAAGGAGGGTGATGATAAAACAGAGACCTATCAAGCTGTTCTTAGTTATTCGATTTTAGAAAGCTCTGTCAGGAAGATCTTCATCTTCA GGAGGAAATCTGATGGCGAAGACTTGTTGGATGCGGATCCCTATTATGCAAAGAAGACAAGGCCCGCATCCTGGTTTGATGGAGTAGACAGTGAAGAAGA AGAAGAAGACATGTTAACCTCTGAGAAGTTAATATTTTGCACGAGGGCCTCCACTAAGAAGATGGGTGGATATCACAAGCCTGTTTCTGGGTCCAGGAAG CGTAAGAGGCCAATTAGAAGTAGGCCCATATCCGGAGTTAATTTAAGCTTACCCGCCGAATCCCTGGCCGTCAGGACTCGGGATACTTTGATCGCCAATT CTATGTTTTCAGGTTATTGCCGTCAGGTTAAATCCTTTACGCTGTTGCAATCCTTGTTGCTCTTCTCGTTGAATCCTTGA
AA sequence Show only first row Show all	>Lus10015674 pacid=23147261 polypeptide=Lus10015674 locus=Lus10015674.g ID=Lus10015674.BGIv1.0 annot-version=v1.0 MEDNPIANSMSAVVDHTTFSDPSADSRSGYQDDKIGDLSSHPVGSLHLTKKIKTEEEKTEGEKMEVDVEEKKKKVYYSATGCRFCKELATREFKAMPDDD DYGCGYLNDDPELKLRVINYLRSKYESGGFDIECLPDGFFGGIYNRDHFFPYFEDAVEASGPACIEDYNAKKTKKLEFKKTINATGTLAKNIVLYLTFEA MDPEKEGDDKTETYQAVLSYSILESSVRKIFIFRRKSDGEDLLDADPYYAKKTRPASWFDGVDSEEEEEDMLTSEKLIFCTRASTKKMGGYHKPVSGSRK RKRPIRSRPISGVNLSLPAESLAVRTRDTLIANSMFSGYCRQVKSFTLLQSLLLFSLNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015674 [exp]	0	1
AT5G10745			unknown protein		Lus10026240 [exp]	6.3	0.8305
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	13.1	0.8234
AT2G25830			YebC-related (.1)		Lus10011628 [exp]	15.9	0.7757
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	19.8	0.7845
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10013049 [exp]	20.4	0.7960
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	20.5	0.8233
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	23.0	0.7944
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	23.2	0.8159
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	34.8	0.7878
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	37.9	0.8061

Compare expression of checked genes

Lus10015674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.