Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14120 1497 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037684 [exp] 2016 / 0 AT3G14120 1545 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165900 [exp] 1627 / 0 AT3G14120 1571 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04121 [flax] [poplar] Nup84_Nup100 Nuclear pore protein 84 / 107
Representative CDS sequence Show only first row Show all	>Lus10015675 pacid=23147207 polypeptide=Lus10015675 locus=Lus10015675.g ID=Lus10015675.BGIv1.0 annot-version=v1.0 ATGGACGTGGAAATGGAGACTTCGCCTGCCTACTTCCGCCCCGAAGATCTCACCATCAGAGAACAGTTTCGTCGATACGGTAAACGGCACTCAATATCGA GCTCGTCACCAGGTCAAGAGAGTACGAGCTCGAGGTTCAAGGATTCTAGGCTACTGTATGATGGGCAAAGTATACACAGTCCCACGAATGCTGCACTCCT TCTCGAGCATATCAAGCAGGAGGCTGATGGTATGGACTCCGATCACTACGATGCCATGCCTGCAAGGGTGCAAGCTTCTGCAAAAAGGAGGTCAGCAATT GAAGGGTTTTCGGAGGCTGATCTCCTTGTTGATCCGGAGCTCCAGACTGGGAGCCAATCTCTTAAAGCGTGCAAGATTGAAGATGAATCGGCAGATAGTG GAGAAGCTGTGTTCGGTCTATTTGCTTCTCTTTTGGATTCTGCTATTCAAGGTTTGATGCCTATTCCGGATTTGATTTTGAGATTCGAGAGATTATGCCG CAATGTCTCAGAAGATATAAGGTCTCAATCAAACATAAGGCACCGAGTTCTAGAGGAAAAAATAATGAGGCAGAAGGTCCAGCTCCTGCTTGATGAGGCT GCCACCTGGTCACTTCTATGGCACCTGTATGGCAAAGTGACCGAAGAGTACCCTGAAGAGCTAATCGTGTCTCCACCAACGTCGCATGTTGAAGCTTGTC AGTTTGTTGCAAATGACCACACAGCACAATTGTGCCTCCGTATTGTTCAGTGGCTGGAGGGTTTAGCATCTAAGTCCCTTGATCTCGAAAGCAAGGTTCA GGAACCTCGTGTGGGTACTTATCTTCCAAATTCTGGAATATGGCACAATACACAACGGTTGCTGAAGAAAGGTACATCTGGCAAAAAGACTGTTCATCAC TTGGATTTTGATGCTCCGACTCGTGAAAATGCTCACCAGCTCCCAGATGATCAGAGACAAGAGGAATCTCTTTTGGAGGATGTATGGACGTTATTAAGGG CTGGGAGATTGGAAGAGGCTTGTGATCTTTGCCGTTCAGCCGGACAGTCTTGGCGAGCTGCAACTTTAAGTCCTTTTGGAGGATTGACTTTGGTTCCTTC TATCGAGGCCCTATTGAAGAATGGAAAAAGTAGAACCCTCCAAGCCATTGAGCTTGAAAGTGGCATTGGTCACCAATTGCGTCTATGGAAATGGGCTGCA TACAGTGCATCGGAGAAAATTGCGGAGCAGAATGGTGGGAAATTTGAAGCAGGTGTTTATGCAGCACAGTGTAGCAACTTAAAGCGCATGCTTCCAATTT GTACCGACTGGGAGTCAGCTTTTTGGGCCATGGCCAAGTCTTGGCTTGATGTTCAGGTTGATCTAGAATTAGCTGGCTTACAACCTGGGAGGTTAGAGCA GCTTAAGAGCCATGGAGATAATACTGAAGGCAGTCCTTTACAAAGTGATAGTGGTTCTCATTCTTCAGGTGGACCAGATAGCTGGCCACTACAGGTCAAG AATCAGCAGCCAAGAAATCTTTCCGCTCTTCTTCAAAAACTCCATTCTGGGGAAATGGTTAATGAAGCTGTTATTAGAGGTTGCAAAGAGCAGCAAAGAC AAATTCAGATGAATATGATGTTGGGGAATATACCACACCTCCTTGACGTCATGTGGTCATGGATAGCACCTTCTGAAGATAACGAGAATGTCTTCAGGCC TCATGGTGATCCGCAGCTGATCCGGTTTGGTGCCCATCTAGTGCTCGTCCTGAGGTATTTACTTGCAGATGAAATGAAGGATTCCTTCAGAGAGAAGCTG ATGAATGCTGGAGATCTCATTTTACACCTGTATGCCATGTTTCTATTTTCCAAGCAACATGAAGAGCTGGTTGGCATATATGCTTCTCAGCTCGCACGTC ACCGTTGCATAGATCTCTTTGTCCACATGATGGAACTAAGGCTAACCAGCAGCGTGCATGTGAAATACAAGCTTTTTCTTTCTGCTATGGAGTACTTACC GTTCTCTCCAGTAGATGATTCCAAAGCTAGTTTTGAAGAGATTATCGAAAGGGTTCTGTCTACATCTCGTGAAATCAAAGTGGGAAAGTATGATAAATCA GCAGAGGTGGCAGAACAGCACAGGTTGCAGAGCCTTCAAAAAGCTACAGTCATCCAATGGCTCTGCTTTACGCCCCCATCAACAATTACCAATGTCAATG ACGTGAGTGGGAAACTTCTTATGCGGGCACTGATACACAGCAACATGTTGTTCAGAGAATTTGCGCTGATTTCTATGTGGAGAGTGCCAGCAATGCCAAT AGGTGCACATGCATTGCTTAGTTTGCTTGCTGAGCCCTTGAAGCGACTTTCAGAACTTCCTGCTGGCTTCGAGGATTACATTTCTGAGAACCTAAAAGAG TTCCAGGACTGGAGTGAGTACTATTCATGTGATGCGACATACCGGAAGTGGCTCAAGGTTGAACTTGACAACGCGGAGGTACCTCCCACTGAGCTCTCCG GTGAAGAGAAGCACAGAGCCGTTACTGCAGCCAGAGAAGCATTGGACTGTTCTTTGTCGTTACTATTAAGAAATGAAGATCCTTGGCTGGCTTCCATAGA CGATCCTGTATATGAATCAGAAAGTCCTGTGTACCTTGAGTTACACGCCACTGCAATGCTCTGCCTGCCTTCGGGTGAATGTATGCTTCCAGATGCTACG GTTTGCACTGCACTAATGAGTGCTCTTTACTCTTCTGTGGGTGAGGAGGTAAAAGTTGCTATTTCAACGAGGGACAATTATTGTATCGAGGTTATCGTAC GGTGTCTGGCAGTGGAAGGCGATGGACTTGGGTCACACCAAGCCAACGATGGCGGTGTTCTAGCTACTGTCATAGCCGCTGGTTTCAAAGGCGAGCTTAA CCGGTTCCAGCCAGGAGTAACAATGGAAATATCCAGATTAGATGCTTGGTATTCAAGCGCAAGTGGCTCCCTTGAATCCCCTGCACCATTCATCGTGCAG GGACTTTGCCGCAGGTGCTGTCTACCAGAACTCATTCTTCGATGCATGGAGGTTTCTGTGTCTCTAATGGAATCAGGAAACACACTGGAGAGCCATGACG ACCTGATTGAACTCGTATCCTCTACCGAGACTGGGTTTCTCCATCTTTTTAGCCAGCAACAGCTTCAGGTGAGCGATGAATTCAAACAAGAGTGTATTTT GCAAGTTCTTGCAATTTTTTCAGTTACAGTGGCTGAGTTTTTGTGA
AA sequence Show only first row Show all	>Lus10015675 pacid=23147207 polypeptide=Lus10015675 locus=Lus10015675.g ID=Lus10015675.BGIv1.0 annot-version=v1.0 MDVEMETSPAYFRPEDLTIREQFRRYGKRHSISSSSPGQESTSSRFKDSRLLYDGQSIHSPTNAALLLEHIKQEADGMDSDHYDAMPARVQASAKRRSAI EGFSEADLLVDPELQTGSQSLKACKIEDESADSGEAVFGLFASLLDSAIQGLMPIPDLILRFERLCRNVSEDIRSQSNIRHRVLEEKIMRQKVQLLLDEA ATWSLLWHLYGKVTEEYPEELIVSPPTSHVEACQFVANDHTAQLCLRIVQWLEGLASKSLDLESKVQEPRVGTYLPNSGIWHNTQRLLKKGTSGKKTVHH LDFDAPTRENAHQLPDDQRQEESLLEDVWTLLRAGRLEEACDLCRSAGQSWRAATLSPFGGLTLVPSIEALLKNGKSRTLQAIELESGIGHQLRLWKWAA YSASEKIAEQNGGKFEAGVYAAQCSNLKRMLPICTDWESAFWAMAKSWLDVQVDLELAGLQPGRLEQLKSHGDNTEGSPLQSDSGSHSSGGPDSWPLQVK NQQPRNLSALLQKLHSGEMVNEAVIRGCKEQQRQIQMNMMLGNIPHLLDVMWSWIAPSEDNENVFRPHGDPQLIRFGAHLVLVLRYLLADEMKDSFREKL MNAGDLILHLYAMFLFSKQHEELVGIYASQLARHRCIDLFVHMMELRLTSSVHVKYKLFLSAMEYLPFSPVDDSKASFEEIIERVLSTSREIKVGKYDKS AEVAEQHRLQSLQKATVIQWLCFTPPSTITNVNDVSGKLLMRALIHSNMLFREFALISMWRVPAMPIGAHALLSLLAEPLKRLSELPAGFEDYISENLKE FQDWSEYYSCDATYRKWLKVELDNAEVPPTELSGEEKHRAVTAAREALDCSLSLLLRNEDPWLASIDDPVYESESPVYLELHATAMLCLPSGECMLPDAT VCTALMSALYSSVGEEVKVAISTRDNYCIEVIVRCLAVEGDGLGSHQANDGGVLATVIAAGFKGELNRFQPGVTMEISRLDAWYSSASGSLESPAPFIVQ GLCRRCCLPELILRCMEVSVSLMESGNTLESHDDLIELVSSTETGFLHLFSQQQLQVSDEFKQECILQVLAIFSVTVAEFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14120			unknown protein		Lus10015675 [exp]	0	1
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	1.4	0.9397
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	2.4	0.9386
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	3.2	0.9248
AT1G64260			MuDR family transposase (.1)		Lus10010073 [exp]	4.2	0.9294
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	4.2	0.9381
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	5.7	0.9336
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	7.5	0.9278
AT5G46070			Guanylate-binding family prote...		Lus10015327 [exp]	9.2	0.9212
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	9.2	0.9300
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	11.0	0.9116

Compare expression of checked genes

Lus10015675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.