Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14110 313 / 6e-108 FLU FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G16760 45 / 4e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037686 [exp] 493 / 4e-178 AT3G14110 304 / 2e-104 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10013168 [exp] 382 / 5e-134 AT3G14110 325 / 9e-113 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10008131 [exp] 374 / 5e-131 AT3G14110 333 / 8e-116 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166000 [exp] 339 / 7e-117 AT3G14110 371 / 4e-129 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.010G007000 [exp] 42 / 0.0005 AT3G16760 267 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015677 pacid=23147226 polypeptide=Lus10015677 locus=Lus10015677.g ID=Lus10015677.BGIv1.0 annot-version=v1.0 ATGGTGGCAATCCATTGTTTTGCTTCTCCGCCGCCGGAACTCTTCGTCTGCGGGAAATCCCATTTCCCCGGGAAGTTGCGTTGTGCCCTGCTCAAAGTAG GCAAGTTAACGTTTCCGCTTAGAAGAAATGCAAGGCATTTTTCCAGTGAACATCAGGATGTCTTGCTTAACCTGTTCTCACCTCATCAGGGCAAAACGCT TTCACGATCATCAGCGATTATAGCATCGTTTTCTACTGCTTTGACGATCGCTGCACCTTCTTCCGAAGCATTGGCTCAAACATGCGAGGCCAATAGCTCG CTCCTCAATATGCCTGCATTGCTATTCGTCGCACTGATTGGGGCCACAGTTGGAGGGTTGCTAGCACGTCAGAGGAAAGGAGAGCTGAAGCATCTGAATG AGCAGCTACGGCAGATCAATGCTGCTCTAAGACGACAAGCAAAGATCGAGTCGTACGCCCCCAAGCTAAGCTACGCACCCATCGGTAGCAAGATTCCAGA GGAGGTGATAGTCGATCCAAGGAAACAAGAACTGGTCTCTCATTTGAGAAGTGGGAAGAATCATTTGAGGAATCAGGATCTGAAAAAGGCATATGATGAG TTCGAGGCAGCCCTTGGAATCTCCCGGGATTTGGGAGATTCCGTAAAGGAAAAGAAAGCTGCAAGAGGGTTAGGAGCTTCGCTACAAAGACAAGGACAGT ACCGCGAAGCTATAAAGTATCACTCGATGGTTCTCGAGATATCCAAGCGGGAAGATGAAGTGTCTGGTAACACAGAAGCGTTTGGAGCTATTGCAGACTG TTACACTGAGTTAGGTGAGCTTGAGCAAGCTGGGAAGTTCTATGATCAGTATATTGCAAGGCTGGAAACCGACTGA
AA sequence Show only first row Show all	>Lus10015677 pacid=23147226 polypeptide=Lus10015677 locus=Lus10015677.g ID=Lus10015677.BGIv1.0 annot-version=v1.0 MVAIHCFASPPPELFVCGKSHFPGKLRCALLKVGKLTFPLRRNARHFSSEHQDVLLNLFSPHQGKTLSRSSAIIASFSTALTIAAPSSEALAQTCEANSS LLNMPALLFVALIGATVGGLLARQRKGELKHLNEQLRQINAALRRQAKIESYAPKLSYAPIGSKIPEEVIVDPRKQELVSHLRSGKNHLRNQDLKKAYDE FEAALGISRDLGDSVKEKKAARGLGASLQRQGQYREAIKYHSMVLEISKREDEVSGNTEAFGAIADCYTELGELEQAGKFYDQYIARLETD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	0	1
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	2.4	0.9781
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	4.5	0.9731
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	4.5	0.9713
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	4.6	0.9726
AT1G48460			unknown protein		Lus10032738 [exp]	4.9	0.9601
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	5.8	0.9550
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	7.7	0.9666
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	7.9	0.9649
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	8.1	0.9243
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	8.5	0.9666

Compare expression of checked genes

Lus10015677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.