Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42880 459 / 3e-154 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 444 / 2e-148 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 438 / 1e-145 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 390 / 3e-127 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 388 / 2e-126 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 369 / 9e-119 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 367 / 5e-118 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 363 / 6e-117 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT2G26730 309 / 5e-96 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 293 / 3e-90 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008128 [exp] 634 / 0 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 631 / 0 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 613 / 0 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10037687 [exp] 443 / 5e-153 AT1G72460 212 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 404 / 6e-132 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 391 / 1e-128 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 374 / 6e-120 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 370 / 3e-119 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 348 / 1e-114 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068800 [exp] 592 / 0 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 583 / 0 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 505 / 2e-172 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 396 / 4e-129 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 392 / 3e-127 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 388 / 1e-126 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 383 / 2e-124 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 381 / 6e-124 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 367 / 1e-118 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 319 / 5e-100 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015678 pacid=23147219 polypeptide=Lus10015678 locus=Lus10015678.g ID=Lus10015678.BGIv1.0 annot-version=v1.0 ATGGCCTGGAAATGGCTCTTCTCCCGCCGGCCAAATTTCCTTCTTCCCATCCTCCTCCTAATCGCCACCGCCACCTCCGCCGCCCCTCCCATATCAGAAT CCGACGCCTTAATCCGTCTGAAAACCTCCCTTATCAATGCCACCTCTCTCGTCTCTTGGATCCCCGGCACACCTCCTTGCCAAGGCAAGCTCGGATGGGA CGGCCTCATCTGCTCAAACGACGCCGTCACCGGCATCCGCCTCGAGAACATGGGATTGTCCGGCGACATCGACGTCGACGCACTTCTCGCCCTCTCAAAC CTCCGAGGAGTCAGCTTCGCGTTCAATTCCTTCACCGGAAAGATCCCCGATCTCAACCGTATCAGCCACCTGAAAGCCGTTTACCTCCACGGCAACCAGT TCTCCGGCGAGATCCCCTCCGATTACTTCCTCAAAATGATCGCTCTAAAAAAACTCTGGCTCGCCAACAACAAATTCGCCGGCCAGATCCCTTCCTCCTT AGGCCAGGTGGCGAATCTGTACGAATTGCAATTGGAGAACAACCAATTCGGCGGGAAAATCCCTAGCTTGAAAGCCGATAAATTGGGGAACTTCAACGTC TCGAATAACAATCTCACGGGAGAAATCCCTAAGGAGCTTGTGAAATTCCCTGCCTCGGCTTTCGGCGGGAACCCTAATCTCTGCGGTCAGAACATCCCGA AGAAATGCGCCGCCGCCGTCCCTCCGGTTAGCGGCACCGCCGCCGTCCCTCCGGTTAGCGGCACCGCCCCGCTGTGTGCGGGGAACCAAGAGCCGTTCGA GGTGCAAGTATCGCTGCCGACGACTAGGCTGCAGCCGCAAGCGCAGGAATCGGGGAGGACGAAGACAGGGGCGGGGCCCAGCAGCCGGTCGAACAAGCCG CAGGGTGCCGGCGGCGGGAACAAGAACGTCGGGGAATTTGTGATGATGAATGAGGACAAAGGAGTGTTCGGGCTGCCGGACTTGATGAAGGCGGCGGCGG AGATTCTTGGAAGCGGAGGATTGGGTTCGTCGTACAAGGCGGTGATTGCCGGAGGGAAGGCGTTGGTGGTGAAGAGGATTAGGGAGATGAACGCTATGGG GAAAGACGGGTTCGAAGCAGAGATTCGAATGCTGGGGAAGATCAGGCATCCGAATGTGCTGACTCCTCTGGCTTTCCATTACCGGAAGGACGAGAAGCTG CTCATCTACGAGTTCGTCCCCACCGGCAGCTTGCTCTTCTTGTTGCACGGCGGCCGTGGGAAAACGTCGCATCAAGGATTGAACTGGATATCGAGACTCC GCATAGTGAAAGGAATTGCAAGAGGGTTAAGCTTCATTCATTCCGAGTTAGGAGGCACGAATCTACCCCACGGGAACTTGAAATCGAGCAACGTATTGGT CGGACCGGACAACGAGCCTAGAGTATCAGAGTATGGGTTCAGCTCCCTGGTCAACTCGAATGTCATCACCAAGGCCCTGCTCGCCCACAAGTCCCCCGAG GCGCTATCCCACGGGGTCGTTTCTCCCAAATCTGACGTGTTTTGCTTGGGCATTCTGATCCTGGAAGTTATGACCGGGAAGGTCCCTTCCCAGTACTCAA GCTCCGGCTCAGCTGGAACCGATTTGGTCCAGCTGGCCGAGTCGGCCCAAGGAAGGGAACCCGAGCTGCTCGATCCGGAAATCGCAGGCACTTCCGGGTC GGTCGGGCAGATGGTGAGGATGATCAAAATCGCGACTCTTTGTGCTCATAGCGTTCCTGAGCAAAGACTGGACTTGAGAGAAGCTACGAAGAAGATCGAC GAGATACAGATTGAGGATAGTTCGATTCCGGAACCGGTTAAGCATAATCATAATCACCATGACAATAAGGAGAGAAGGAAGAAGGGACGTGGAAGCCGGA GTAGCTTGTCGACCGATTTCACCGAAACCTCGTGA
AA sequence Show only first row Show all	>Lus10015678 pacid=23147219 polypeptide=Lus10015678 locus=Lus10015678.g ID=Lus10015678.BGIv1.0 annot-version=v1.0 MAWKWLFSRRPNFLLPILLLIATATSAAPPISESDALIRLKTSLINATSLVSWIPGTPPCQGKLGWDGLICSNDAVTGIRLENMGLSGDIDVDALLALSN LRGVSFAFNSFTGKIPDLNRISHLKAVYLHGNQFSGEIPSDYFLKMIALKKLWLANNKFAGQIPSSLGQVANLYELQLENNQFGGKIPSLKADKLGNFNV SNNNLTGEIPKELVKFPASAFGGNPNLCGQNIPKKCAAAVPPVSGTAAVPPVSGTAPLCAGNQEPFEVQVSLPTTRLQPQAQESGRTKTGAGPSSRSNKP QGAGGGNKNVGEFVMMNEDKGVFGLPDLMKAAAEILGSGGLGSSYKAVIAGGKALVVKRIREMNAMGKDGFEAEIRMLGKIRHPNVLTPLAFHYRKDEKL LIYEFVPTGSLLFLLHGGRGKTSHQGLNWISRLRIVKGIARGLSFIHSELGGTNLPHGNLKSSNVLVGPDNEPRVSEYGFSSLVNSNVITKALLAHKSPE ALSHGVVSPKSDVFCLGILILEVMTGKVPSQYSSSGSAGTDLVQLAESAQGREPELLDPEIAGTSGSVGQMVRMIKIATLCAHSVPEQRLDLREATKKID EIQIEDSSIPEPVKHNHNHHDNKERRKKGRGSRSSLSTDFTETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72460			Leucine-rich repeat protein ki...		Lus10015678 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	11.2	0.9929
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10007220 [exp]	16.1	0.9923
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	19.7	0.9920
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	22.9	0.9918
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	25.6	0.9918
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	25.9	0.9817
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009470 [exp]	28.0	0.9918
					Lus10019052 [exp]	29.1	0.9632
					Lus10004351 [exp]	30.3	0.9918
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	31.2	0.9687

Compare expression of checked genes

Lus10015678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.