Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72490 203 / 1e-62 unknown protein AT1G17400 187 / 3e-56 unknown protein AT1G19115 69 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037689 [exp] 413 / 2e-144 AT1G72490 246 / 9e-81 unknown protein Lus10008123 [exp] 226 / 6e-71 AT1G72490 200 / 2e-62 unknown protein Lus10013160 [exp] 222 / 1e-69 AT1G72490 202 / 1e-63 unknown protein Lus10015678 [exp] 195 / 5e-56 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 136 / 6e-36 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10039921 [exp] 59 / 8e-10 AT1G17400 80 / 2e-18 unknown protein Lus10027660 [exp] 58 / 2e-09 AT1G17400 81 / 5e-19 unknown protein Lus10008128 [exp] 43 / 0.0004 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068300 [exp] 238 / 4e-76 AT1G72490 279 / 2e-94 unknown protein Potri.001G166700 [exp] 233 / 2e-74 AT1G72490 269 / 2e-90 unknown protein Potri.006G140100 [exp] 103 / 3e-25 AT1G72490 143 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015679 pacid=23147186 polypeptide=Lus10015679 locus=Lus10015679.g ID=Lus10015679.BGIv1.0 annot-version=v1.0 ATGCAAAACAAGTTAAGCGGGAAGCAGGACACGAAAAGTAGTCACACTGTCGTTATTACTAAAAAGCCGGCTGCTGCAACGACTAGTCGTCCATCTACTC ATTTCAAGAACCAAGAGCCTAGAGAGGAATTCAGTGATTGGCCACATGGGTTGCTAGCCATTGGAACATTTGGAAACACCAACGGCAACAGCAATAACAA TAAAGACGAAATCGAACGTGTCGTTGATGTCGAAGAAGACATCAACGACGCATTGGAAGATCATGATCTAACAGCGTCAGTGCCTGACGATCTTCAAGGG TTTACTTCTGAAGAGATCGAAAACTTACAAAAAGAATTGACCAAGTTACTGACTCGAAAGCCAAAACAAGTTAAAGAGAAGGAATTCGTTGCTAATTTGC CGTTGGACAGATTTCTAAACTGTCCGTCGAGCCTGGAAGTGGACAGGAGGCTCAGCACAGGCGTGGCGAGTAGTTGTTCATTGGACGAGCAGAGCATAAA AGAGGAAGATGATGACATTGAGAGGACAATTAGTGTCATACTTGGTAGATGCAAAGACATTCAAGCCAAGAAGAAGAAAGACAATAAGGCCATTGGGAAG AAATCCATATCTTTCCTTCTCAAGAAGATGTTTGTTTGTTCAAGTGGGTTTGCTCCTCAGCCTAGCTTGAGAGATACCCTTTCCGAATCAAGAATGGAGA AGTTGCTAAGGACAATGTTGCACAAGAAGATGAACTCTCAAAACGGGGCATCTAGGGCTTCCTCCATGAAAAGATACATCGAAGGGGACAAGCAACGGAA CATGATCAACGGCCAGAGTATGAGATCAGATGAGTTGGATCAAGAACAAGAAGAGGATCAACCGCGTCGTAAAACCGCCGCCGATGGGAGTAAATGGGTC AAAACTGATTCCGAGTCGTCACGAGGTTTCGGTGAAATCGGTCGACAAGCTACTCCGGCTTCCACGTCCCTTCTTCCTTCTCTCCTTATTGTCATGGTGA TTATGATTATGCTTAACCGGTTCCGGAATCGAACTATCCTCAATCTGTATCTCGTCGATCTTCTTCGTAGCTTCTCTCAAGTCCAGTCTTTGCTCAGGAA CGCTATGAGCACAAAGAGTCGCGATTTTGATCATCCTCACCATCTGCCCGACCGACCCGGAAGTGCCTGCGATTTCCGGATCGAGCAGCTCGGGTTCCCT TCCTTGGGCCGACTCGGCCAGCTGGACCAAATCGGTTCCAGCTGA
AA sequence Show only first row Show all	>Lus10015679 pacid=23147186 polypeptide=Lus10015679 locus=Lus10015679.g ID=Lus10015679.BGIv1.0 annot-version=v1.0 MQNKLSGKQDTKSSHTVVITKKPAAATTSRPSTHFKNQEPREEFSDWPHGLLAIGTFGNTNGNSNNNKDEIERVVDVEEDINDALEDHDLTASVPDDLQG FTSEEIENLQKELTKLLTRKPKQVKEKEFVANLPLDRFLNCPSSLEVDRRLSTGVASSCSLDEQSIKEEDDDIERTISVILGRCKDIQAKKKKDNKAIGK KSISFLLKKMFVCSSGFAPQPSLRDTLSESRMEKLLRTMLHKKMNSQNGASRASSMKRYIEGDKQRNMINGQSMRSDELDQEQEEDQPRRKTAADGSKWV KTDSESSRGFGEIGRQATPASTSLLPSLLIVMVIMIMLNRFRNRTILNLYLVDLLRSFSQVQSLLRNAMSTKSRDFDHPHHLPDRPGSACDFRIEQLGFP SLGRLGQLDQIGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72490			unknown protein		Lus10015679 [exp]	0	1
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	1.7	0.9737
AT1G72490			unknown protein		Lus10037689 [exp]	2.4	0.9787
AT2G32970			unknown protein		Lus10030016 [exp]	2.8	0.9780
					Lus10020564 [exp]	5.5	0.9677
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	7.1	0.9732
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	7.2	0.9733
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	7.7	0.9728
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	8.5	0.9685
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	10.0	0.9558
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	15.5	0.9662

Compare expression of checked genes

Lus10015679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.