Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14075 705 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 565 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT2G42450 113 / 3e-26 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 74 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 73 / 3e-13 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 67 / 2e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G05790 59 / 9e-09 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008121 [exp] 860 / 0 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 857 / 0 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 598 / 0 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 580 / 0 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037690 [exp] 148 / 4e-42 AT3G14075 137 / 4e-39 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10024878 [exp] 127 / 1e-30 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 121 / 4e-28 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10030391 [exp] 79 / 2e-15 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 79 / 2e-15 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G067900 [exp] 767 / 0 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 619 / 0 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 611 / 0 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 116 / 4e-27 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 82 / 2e-16 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G083600 [exp] 77 / 1e-14 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 74 / 1e-13 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 74 / 1e-13 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 69 / 6e-12 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 67 / 2e-11 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10015680 pacid=23147227 polypeptide=Lus10015680 locus=Lus10015680.g ID=Lus10015680.BGIv1.0 annot-version=v1.0 ATGGCCACAGCAACAATGGCGACTGGAGCTGGTGCGGCTGCTCTTTTGTACTACACTCTGAACCGTAAACTACAGACTGGTGAATCCAATCATGTTCATG ATGATGAGGACAATGATACCGGTACAGCTACCGGAGTGCGGTTGGGGATCAATCGAGTCTCGGGTAGATTGATTCAAGCCCCTGGTACATGGTTGGAGAC GATCTCGACTTTGTCTGAGACTTTGAGGTTCACGTACTCTGAGACCCTTGGCAAGTGGCCCATTGCTGACTTGGCATTTGGGATCAACTTCTTATTGAAG AGACAGGGAAACTTACTTGTCGCCGAAGTATTTGGTGGTAAAGATAACTTACAGCTGAAGGGACCAGAAATAGCAGCTGAACTCAAATATCTCCTACACT TACTAACCTTATGTTGGCATTTCTCCAAAAAGCCTTTTCCTTTATTTCTGGAAGAGACAGGATTCAGCGAAGAAAATGTTCTTCTTCAAGAACCAAAAGC AGGAATTTTGAAGCCGGCTTTCACAATACTAGTTGACCACCCGACGAAGCAGTTCCTGTTACTAATACGAGGGACGCATAGTGTTAAGGATACGTTGACG GCTGCAACTGGAGCAGTTGTGCCGTTTCATCACACTGTTGTTAATGAAGGAGGAGTCAGCAAATTGGTTTTGGGATATGCGCACGGTGGAATGGTTGCTG CTGCTCGATGGATTTCGAAGCTTGCGGTTCCTTGTCTTAAGGATGCTCTCTCCCTGCGTGCTGATTATAAGCTCAAGATTGTTGGGCATTCGTTGGGGGG AGGGACAGCGGCGCTGTTGACCTATATGATGCGCGAACATAATGAGTTATCGACAGCAACTTGCGTTACATTTGCTCCAGCTGCTTGTATGACGTGGGAA TTAGCTGAATCGGGCACTGATTTTATCACTTCCGTTATAAATGGAGCCGATCTAGTCCCTACTTTTTCTGCAGCTTCTGTAGATGATCTACGTGCAGAGG TAACAGCATCTGCCTGGATCAATGATTTGAGGAATCAAATCGAGCGCACTCGGATACTAAGCACAGTTTATCGCTCTGCATCGGCATTGGGCTCTCGCCT TCCATCCATTGCTAGTGCGAAAGCGAAAGTTGCCGGAGCAGGGGCCATTCTGCGCCCTGTTTCGAATGGCACACAGGTTGTCATGAAGAGAGCTCAAAGC ATGGCTCATGCAGCATGGACGACTCGCCCTGCTCTTAATTTATCTTCGTGGTCATGTATCAGTCCCCGACAACGTACGACAACTGCACATTCAAACCTAG AGGAAGGAAGCTCCCCCCATTCGCCCTCAAAGACCGAAACTTCTAGGCCTCTTATATCTGTTATTGAGGATATTGACATTACTTTATCGACATGTGGAGA GCAATGGAGTTCAGAAATCGATAGCTCTTGCACTGATGAACCTAACGATAATGCTGAGCTTATGAGTGATGCAAATGAAGACCGGTTGAATGAAGTCGAG ATGTGGCACCAGCTAGAGCACGAGCTCTATGACGGGATGGAGGGTGATGATGATGATGATGATTGCGTAAATGAAATAATCGAAGGAGAGGAAGAAGAAG CAGAAGACGCCATTGGTGAGGCGGTTGAAGACGGAGGAGGTGAAAGCTCTGTTCCGCAAATAAAGGAAGTGCACAGATTCTTTCCTGCTGGGAAGATAAT GCACATCGTCACCTTCCCTATCGACAAGGAAACTAATGATAATGATGGCGACGGCTCCTCCTCTGACGGCTCTGATAACAGCAAACCACAGCCTTTGGAG ACAACGATTGGGATATTCGCTACTCAGCGATCGCTTTATAGTAAAGTAAGACTCTCGCAGACGATGATCAGTGATCATTTCATGCCTGTATATAGAAGAC AGATAGAGAAGGTTATACAAGAACTCGAGAAAGACGAAAGTCCTGCAACAAGGTTATACCATGATACTTGA
AA sequence Show only first row Show all	>Lus10015680 pacid=23147227 polypeptide=Lus10015680 locus=Lus10015680.g ID=Lus10015680.BGIv1.0 annot-version=v1.0 MATATMATGAGAAALLYYTLNRKLQTGESNHVHDDEDNDTGTATGVRLGINRVSGRLIQAPGTWLETISTLSETLRFTYSETLGKWPIADLAFGINFLLK RQGNLLVAEVFGGKDNLQLKGPEIAAELKYLLHLLTLCWHFSKKPFPLFLEETGFSEENVLLQEPKAGILKPAFTILVDHPTKQFLLLIRGTHSVKDTLT AATGAVVPFHHTVVNEGGVSKLVLGYAHGGMVAAARWISKLAVPCLKDALSLRADYKLKIVGHSLGGGTAALLTYMMREHNELSTATCVTFAPAACMTWE LAESGTDFITSVINGADLVPTFSAASVDDLRAEVTASAWINDLRNQIERTRILSTVYRSASALGSRLPSIASAKAKVAGAGAILRPVSNGTQVVMKRAQS MAHAAWTTRPALNLSSWSCISPRQRTTTAHSNLEEGSSPHSPSKTETSRPLISVIEDIDITLSTCGEQWSSEIDSSCTDEPNDNAELMSDANEDRLNEVE MWHQLEHELYDGMEGDDDDDDCVNEIIEGEEEEAEDAIGEAVEDGGGESSVPQIKEVHRFFPAGKIMHIVTFPIDKETNDNDGDGSSSDGSDNSKPQPLE TTIGIFATQRSLYSKVRLSQTMISDHFMPVYRRQIEKVIQELEKDESPATRLYHDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	0	1
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	2.4	0.9520
AT5G54850			unknown protein		Lus10011150 [exp]	7.5	0.9298
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	7.9	0.9368
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	8.4	0.9349
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	9.6	0.9363
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	10.6	0.9354
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	11.2	0.9333
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	12.0	0.9200
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	13.7	0.9239
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	14.3	0.9216

Compare expression of checked genes

Lus10015680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.