Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51600 728 / 0 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT5G62250 511 / 2e-174 MAP65-9 microtubule-associated protein 65-9 (.1) AT3G60840 488 / 6e-164 MAP65-4 microtubule-associated protein 65-4 (.1) AT5G55230 468 / 4e-157 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT4G26760 459 / 1e-153 MAP65-2 microtubule-associated protein 65-2 (.1) AT1G14690 444 / 1e-147 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT2G01910 429 / 9e-142 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT1G27920 356 / 6e-114 MAP65-8 microtubule-associated protein 65-8 (.1) AT2G38720 351 / 8e-112 MAP65-5 microtubule-associated protein 65-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037691 [exp] 1340 / 0 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10032567 [exp] 465 / 6e-155 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10043178 [exp] 462 / 4e-153 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10031939 [exp] 426 / 2e-140 AT2G01910 838 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10035099 [exp] 416 / 2e-136 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10026114 [exp] 384 / 2e-124 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10008705 [exp] 383 / 2e-124 AT2G38720 565 / 0.0 microtubule-associated protein 65-5 (.1) Lus10015789 [exp] 382 / 2e-123 AT1G27920 673 / 0.0 microtubule-associated protein 65-8 (.1) Lus10041635 [exp] 354 / 3e-113 AT2G38720 550 / 0.0 microtubule-associated protein 65-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131400 [exp] 896 / 0 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.012G129600 [exp] 891 / 0 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.014G070100 [exp] 601 / 0 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.011G092500 [exp] 470 / 5e-158 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.001G356500 [exp] 464 / 1e-155 AT5G55230 853 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.008G139700 [exp] 442 / 6e-147 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.003G192400 [exp] 392 / 8e-128 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.003G173300 [exp] 392 / 1e-127 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.001G055100 [exp] 378 / 8e-122 AT1G27920 623 / 0.0 microtubule-associated protein 65-8 (.1) Potri.005G057150 [exp] 199 / 3e-60 AT5G51600 181 / 1e-54 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [flax] [poplar] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Lus10015684 pacid=23147225 polypeptide=Lus10015684 locus=Lus10015684.g ID=Lus10015684.BGIv1.0 annot-version=v1.0 ATGTCTCCTGTACAAAAAGATCCATCGGTTCAGGCTGAGACAACTTGTGGTACTCTTTTATCAGAGTTGCAGATAATCTGGAATGAAGTTGGTGAGTCTG ATACTGATAAGGATAAGATGTTGTTTGAACTCGAGCAAGAGTGTCTGGAAGTGTACAGAAGAAAGGTGGACCAGGCAAACCGTAATAGGGCGCATCTAAG GCAGGCGATTGCTGATTCTGAAGCTCAGCTTGCAGCAATCTGTTCTGCCATGGGCGAACGACCAGTACACATTAGGCAGGCTGATCAAACCAGTGAAAGT TTAAAGGCAGAACTTCAAAAGATTCTTCCACAACTTGAGGAAATGCAAAAGCGTAAAGTGGACAGAAGAAATCAGTTCGTTCAAGTTCTTGAAGAGATCA GGAAAATTTCATATGAGATAAATGAAACAGCTGATGATGGTTTTGTTAACGAGAGTGATCTTTCCTTGCGGAAGCTGGAAGAGTTGCACAAGAAACTCCA AGTACTTCAAACTGAAAAGAATGATCGCTTGAAACAGGTCAAAGAGTATTTAGATACAGTCAACTCCCTATGTCTGGTACTTGGTATGGATTCGATGCAG ACGATTGCTGAAATTCATCCAGAAGCGAGTAATACTGATGTATCAAAGAGAATCAGTAATGACGCCATCAAAATTTTAGCTACTGCTATTCACAGATTGC GAGAGGTCAAACTACAAAGAATGCAGAAGCTTCAAGATCTTGCAACTGCATTGCTGGAGCTGTGGAACTTGATGGACACCCCTATAGAGGAGCAGCAAAG ATTCCAGAATGTTACATGCAATATAGCTGCAGCAGAACATGAGATAACTGAACCAAACACACTCTCCTTGGACTTCGTAAACTTTGTTGGAGCAGAAGTC TCTCGGCTGGAGGAGTTGAAAATTAGCAGGATGAGAGAGCTAGTTCTGAAAAAGAGGTCAGAGCTGGAAGAAGTCTGTCGGAAGACACATATGATCCCAG AAGCAAATACAGCGTTAGATTGTGCCATCGAAGCCATAGAGTCCGGACAAATAGACCCTGGAAGTATCCTGGAGCAGATTGAGTTTCAAGTTGCCAACGT GAAGGAAGAAGCATATAGCAGGAAGGAAATACTTGACAAGGTTGAGAAATGGAGAGCTGCATGTGAGGAGGAATCTTGGCTTGAGGAGTATAATAGGGAT GATAATAGATACAATGCTGGAAGAGGTACTCATTTGATTCTCAAGCGGGCTGAGAAAGCTCGTGCTTTAGTCACCAAAATTCCAGGCATGGTGGAGGCTT TGGCTTCAAAAACAATGGCATGGGAAAAGGAGAGGGGCATAGAGTTCCTATACGACGGTATTCGGCTACTTTCCATGCTTGAAGAGAATACCATACTACG GCAAGAGAAAGAGGAAGAAAAGAGAAGGCAGCGGGATCAAAAGAAGCTACAAGGACAGCTGATAGCAGAACAAGAGGCACTTTACGGGTCAAAACCAAGC CCTTCTAAGAATATAAGTATGAAAAAGGGATCTAGAGTTTCAATGGGAGGTGCGGGTGCAGCAAGCAGTAGAAGACTCTCGGTCGGAGGAGCTGTGCCGC AAACTCCAAAACTCGACAAGACGCTCTCTAGCCAAACACTGAACTACCGATCTGCCAAGAAAATCAACCACAATGACACCCTAAGTCAGTATCAGGATGA TACATTCTCTACCTATTCAGCTGGTAGGAGAGGCTTGGGCTTGGATGTAACTGGTTTCCCAGTTAAAGCTCAATCCTTTGGTGCTGCAAATAGCCGTGAT CCCGATCCTGCAATGCTGCGTAAGCCGTTTTCTCCAATATCTTCTTCCACGGCATCATCAAAAACCAATGTGTTAGAAGACAATGCTGCATTGAAGAAGG CAGTAATCCCACCATTAAAAGACCAGTCTTTCACCACACCAGCAAAGACTACTGCTGCTATTTCCTCCATGGCTGATGAAGAAAACAGAACTCCAAAGGT GCTGCCGATGATAATGCCTGCAATTACACTCTCCACACCTTCCATCCCAATGCAGACCGCCATGACTCCAGCAGTTTTAGTAGCTCCTTCAGCTCGAATT CCTTTCGGTGGTGGTAAGTCGTTCGAAGAGACGGTTCCTGAAGAAATCGAGTACTCATTTGAAGAACGAAGAGCTGGATTTGTGGTGCTTCCGCAGATAG CACACGTAAAGAAGGCGCTGATACAAGTTTAG
AA sequence Show only first row Show all	>Lus10015684 pacid=23147225 polypeptide=Lus10015684 locus=Lus10015684.g ID=Lus10015684.BGIv1.0 annot-version=v1.0 MSPVQKDPSVQAETTCGTLLSELQIIWNEVGESDTDKDKMLFELEQECLEVYRRKVDQANRNRAHLRQAIADSEAQLAAICSAMGERPVHIRQADQTSES LKAELQKILPQLEEMQKRKVDRRNQFVQVLEEIRKISYEINETADDGFVNESDLSLRKLEELHKKLQVLQTEKNDRLKQVKEYLDTVNSLCLVLGMDSMQ TIAEIHPEASNTDVSKRISNDAIKILATAIHRLREVKLQRMQKLQDLATALLELWNLMDTPIEEQQRFQNVTCNIAAAEHEITEPNTLSLDFVNFVGAEV SRLEELKISRMRELVLKKRSELEEVCRKTHMIPEANTALDCAIEAIESGQIDPGSILEQIEFQVANVKEEAYSRKEILDKVEKWRAACEEESWLEEYNRD DNRYNAGRGTHLILKRAEKARALVTKIPGMVEALASKTMAWEKERGIEFLYDGIRLLSMLEENTILRQEKEEEKRRQRDQKKLQGQLIAEQEALYGSKPS PSKNISMKKGSRVSMGGAGAASSRRLSVGGAVPQTPKLDKTLSSQTLNYRSAKKINHNDTLSQYQDDTFSTYSAGRRGLGLDVTGFPVKAQSFGAANSRD PDPAMLRKPFSPISSSTASSKTNVLEDNAALKKAVIPPLKDQSFTTPAKTTAAISSMADEENRTPKVLPMIMPAITLSTPSIPMQTAMTPAVLVAPSARI PFGGGKSFEETVPEEIEYSFEERRAGFVVLPQIAHVKKALIQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	0	1
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	1.0	0.9820
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	1.4	0.9807
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	1.7	0.9779
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	2.2	0.9760
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	2.8	0.9776
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	3.5	0.9748
AT4G09060			unknown protein		Lus10036467 [exp]	4.5	0.9672
AT3G15550			unknown protein		Lus10035906 [exp]	4.6	0.9738
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	6.2	0.9702
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	6.3	0.9722

Compare expression of checked genes

Lus10015684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.