Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40980 442 / 2e-145 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037692 [exp] 1234 / 0 AT2G40980 457 / 5e-152 Protein kinase superfamily protein (.1) Lus10035407 [exp] 541 / 0 AT2G40980 760 / 0.0 Protein kinase superfamily protein (.1) Lus10031009 [exp] 540 / 0 AT2G40980 764 / 0.0 Protein kinase superfamily protein (.1) Lus10012112 [exp] 49 / 2e-05 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10034860 [exp] 46 / 0.0001 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10010430 [exp] 46 / 0.0001 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10033400 [exp] 44 / 0.0005 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10031004 [exp] 44 / 0.0007 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137600 [exp] 877 / 0 AT2G40980 523 / 1e-177 Protein kinase superfamily protein (.1) Potri.008G083300 [exp] 569 / 0 AT2G40980 745 / 0.0 Protein kinase superfamily protein (.1) Potri.010G173100 [exp] 566 / 0 AT2G40980 750 / 0.0 Protein kinase superfamily protein (.1) Potri.010G247400 [exp] 45 / 0.0002 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015685 pacid=23147212 polypeptide=Lus10015685 locus=Lus10015685.g ID=Lus10015685.BGIv1.0 annot-version=v1.0 ATGTCTGAGATGAGGCAGGCTGGACATCTAGCTTGCCGGACTCAATACCTGACTCTTGTTGATGCGTATTTGAACGCAAAGCTGCATGCGGACCGTGTCT TGAAGATGATGAAGGCTGACAGGATCCATCCCAACAATGCAATGACTTTTCAGTCTTTATGTACTAAAGGCTGCTATAATGCAGGCTTGCAAGAAAACGA TGCCAGTGTGTCACTTAGGGAAGGCTTGAATGGAAGTTTTAGGAAGACCAGAACAGGTCTGTCGCAGCACAATGACTTGGATTCGTCCGTTGGAAGAAGT TTGGATGGTAGTTTCAGGATCTCAGGCTCTGTGTTATCTGGAAGGAGTTTATCGGATCTTTCCACTACAAGCAAATCACTTCCTAGCTCCAGAAGACTGT CCAAGGCTCTGAAGGAGTGTGCACGAAACCTCATCAGCCTCGATCTCTTCACACATCGACTCGAAACCTGGGTTTCCGAAAACACTCAACAAGATTCACA ATCCGAAATATTCAGGTCTCCCTTCTCCATTGATGAATTACTGAACCTTGACTTAGCATTGGAAGGAGTCCCTTTCAAGCAACTATGCCGCATGCCTTGC TCCACTACTCATTCGTCTAACGATACACAAGAAGGCCACTATCTCGCGATCGAGGACTTCCTCCACGCGGTAATGAACGGTCTGTGGCGTACATTTTGGC ACAAAAGTCGACCATCTCCATTTAGCATATCGTGTCCACGTAAACTCGGATCGAAATTCTATACTTCTGTAGAGACAGCTGCTTCTAGAGGAAGGCTCGA AGAGATCCAAGGTGTGGCACTCGTATTGAAATCTGAGGATCATTCACATTGGCACCAAGTGATTGAGTTCACCTTGTTTAGACCGAATATACTGTCCGAT AATGAAGAACTGAAGCTATCTCCAGGGATCATCTGTGAAGCCATATTTTTCGGTGTTCATATACTTCTTGCTAGAAGCTTGAGGAACAAGCTAAGTATTA CAGCTGGCAGCAGATCTTTTGTTTACATTCTGGTTTGTGACTCAACATTTGGCGGCATGGTGAAGATCGAAGGCGATCTGAGTCAACTCGAGCTGAACCA TACCGATGATCCTTACGACTCTGTAACCGAATGGATCAAGTGCCATTCCGAAATTCGAGTTTCGCCGGTTGATCAGGTGTGGAACAGGCTAGGTAATGCG AACTGGGGAGATATAGGGACTTTGCAAGTGATTTTAGCAACTTTCTACTCAATGGTGGAATCGATCGGCTCGCCTAAGAAGTCAGTATCTTTGTTGGCGT CGGAGCATGGTCTAAGGGTCCAGAAACGAAAAATCGAACGTCAGGTGATCAGAAATGAGTCCACTTCGATCAGAAATGAGTCCACTTCAGAGATCAGAAA TGAGTCCACTTCAGAGATCAGAAATGAGATCGTAGAGGTTTATACTCCGAAAAGATTGAAGCTTCGACCGGGAGAAATGCTAGTGGTGGATGATCAGGAG CAAGGTCCGAAAAGATTCCAAATCCAGGAATCTTCAGTCGGAGGGAATCATTTCCTTTACAGTGCAGTTGAGCTGGATTCTCCAGAAAAGCTACTGACTT TATACGTCGGAGCACATCCCTCGAAACTCGAGCCATGCTGGGAAGACATGAGTCTATGGTATCAAGTACAAAGACAGACAAAAGTATTGAACATCTTGAA AAAGAAAGGATCTTTTCACAACAGATGCCTTCCGGAGAAAGTTTCATCCGGTCGAGTGTTGCATTCCGGTCAATGCACGAGACAGAACCCTCGTGGAACG TGTGACCATCCAATTTGTGGCACTCCGGTACTCGTGACGTCTCCTTTAGGGGAGCCGATATCGTTCATTGTCGCGAAAGATGGAGCCTTTCGATCTCAAG AGGCGATCCGTTGCTGTAGAGATTGCCTTGCTGGGTTAGGTACTGCTGCATCTGCCAATGTCCTACATGGTGACATCTGTCCCGAGAATATCGTTCGGTT TCATGATCGACAAGGTAGATTTTCCTACTTGGCGATCTCATGGGGGCGAGCAGTATTGGAGGAGAAGGATGGTGCAGCAATAAATTTACAATTTTCGTCG TCCTATGCGCTTCAGAACGGGAAGCTATGTCCATCATCTGATGCCGAGAGTCTCGTGTACGTATTATTATTCGTCTGTGGAAGAAGCGGGACAATGCAGC ACGATTCGATCGAATCGGCGTTGCAATGGAGGGAGAGGAGCTGGGGGGAGAGATTGATCCAGCGAGAGCTCGGTGAGGTTTCGCCGATTTTGAAGGCGTT TGCTGACTATGTTGATAGCCTTTCAGGAACTCCTTACCCTGTTGAGTATGAAGTGTGGGTGGAGAGACTGAGTCGAGTCATCGATGGTGGCGGCTCGGGG GATAAGGGCAAAATGATGGTCAAGGATGACGTGGATTTTTCGGAACTGATGTTGGATGATGATGAGGATGTTGCTGAATCTTCTTGTTCAAAGAACTGA
AA sequence Show only first row Show all	>Lus10015685 pacid=23147212 polypeptide=Lus10015685 locus=Lus10015685.g ID=Lus10015685.BGIv1.0 annot-version=v1.0 MSEMRQAGHLACRTQYLTLVDAYLNAKLHADRVLKMMKADRIHPNNAMTFQSLCTKGCYNAGLQENDASVSLREGLNGSFRKTRTGLSQHNDLDSSVGRS LDGSFRISGSVLSGRSLSDLSTTSKSLPSSRRLSKALKECARNLISLDLFTHRLETWVSENTQQDSQSEIFRSPFSIDELLNLDLALEGVPFKQLCRMPC STTHSSNDTQEGHYLAIEDFLHAVMNGLWRTFWHKSRPSPFSISCPRKLGSKFYTSVETAASRGRLEEIQGVALVLKSEDHSHWHQVIEFTLFRPNILSD NEELKLSPGIICEAIFFGVHILLARSLRNKLSITAGSRSFVYILVCDSTFGGMVKIEGDLSQLELNHTDDPYDSVTEWIKCHSEIRVSPVDQVWNRLGNA NWGDIGTLQVILATFYSMVESIGSPKKSVSLLASEHGLRVQKRKIERQVIRNESTSIRNESTSEIRNESTSEIRNEIVEVYTPKRLKLRPGEMLVVDDQE QGPKRFQIQESSVGGNHFLYSAVELDSPEKLLTLYVGAHPSKLEPCWEDMSLWYQVQRQTKVLNILKKKGSFHNRCLPEKVSSGRVLHSGQCTRQNPRGT CDHPICGTPVLVTSPLGEPISFIVAKDGAFRSQEAIRCCRDCLAGLGTAASANVLHGDICPENIVRFHDRQGRFSYLAISWGRAVLEEKDGAAINLQFSS SYALQNGKLCPSSDAESLVYVLLFVCGRSGTMQHDSIESALQWRERSWGERLIQRELGEVSPILKAFADYVDSLSGTPYPVEYEVWVERLSRVIDGGGSG DKGKMMVKDDVDFSELMLDDDEDVAESSCSKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	2.0	0.8790
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	2.6	0.8892
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	2.8	0.8515
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	4.2	0.8616
AT5G38880			unknown protein		Lus10034366 [exp]	5.7	0.8412
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027968 [exp]	6.0	0.8081
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	6.0	0.8327
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	7.0	0.8433
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	7.7	0.8504
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	9.4	0.8024

Compare expression of checked genes

Lus10015685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.