Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02860 213 / 3e-67 C2H2ZnF zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037693 [exp] 444 / 1e-157 AT3G02860 265 / 3e-87 zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135500 [exp] 229 / 2e-73 AT3G02860 177 / 5e-53 zinc ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015686 pacid=23147215 polypeptide=Lus10015686 locus=Lus10015686.g ID=Lus10015686.BGIv1.0 annot-version=v1.0 ATGGATAAGAAGGCGTTGTTTAGAGCTAAATTGAATGCTCAGAAGAAGGTCCAGCGAATCGATTCTCCTCTAGTCAGGTATAACGAGTCTGATCAACCGG TTTGTAGAGTGTGCAATTTTCTTTTGAAGGAATCTCAATGGGATGCTCACCAAGCTTCTCGCAAACATCGTGAGGCAATAGATAAACTAAAGGCTAATGC AGCTGCGAAGACGAATGCTACGAATTCGAAACCGGAACCTCGTTCTGAATCAACCAGAGTTGCATCCACAAAAAGTGTAGAGTCTGCTACACAGAAAGCT GATCCACCAACAAAGTCATCAAAGCCACAGTCATCATCTGCACTTCCTCCGAACTTTTTTGATAATCATGGGCCAAAGAGCCAAAGCACTGGTGCAAACT CTGACAAGGTGGCGGATTCAGATCCACATAGCGAGTTAAATGGTTCCCTTGGACCCAAAACTACTGAGCCTCTTCCAGAGGATAAACCGGAAGCACATTC TGCAGAGGTTGCTAGAGAGCATACACAGTCCCAAACAGATGTCACTCACTCGGAAACCAAATTGGCGAAGGGGTCTCTCCCAGAAGGTTTCTTTGATAAC CAGGAAGCTGATTTGCGGGCTCGTGGCATAAAGATTGTGAAGCCGGATGTTAAGGATGAGTACAAAGAATTCGAGAAACTGATCCAAGAAGACCTGAGGG AGGTAGACGACCGGTTAGAGGAAGAGGAGATTGATGCAGCTGAGAAGATCGAAGAAGCCGAGACTGTAGAGCAGAAGACCTACATGGAAAAGGTGGAATT GCTGAAAAGGAGGAGAATGGAGTTGGAATCTGCCAAGTCAGCGAAACGGAGTAAAGGCAGAGGAGCTGGTTCGAAGGTCACGAAGAAAGAATCCGGTGAT GAAGAAGATTCTTCCAGCGATGGAGACAGCGACGGCGAGGGTAATTTCACAGTTGATTGGAGAGCTCAACATCTATGA
AA sequence Show only first row Show all	>Lus10015686 pacid=23147215 polypeptide=Lus10015686 locus=Lus10015686.g ID=Lus10015686.BGIv1.0 annot-version=v1.0 MDKKALFRAKLNAQKKVQRIDSPLVRYNESDQPVCRVCNFLLKESQWDAHQASRKHREAIDKLKANAAAKTNATNSKPEPRSESTRVASTKSVESATQKA DPPTKSSKPQSSSALPPNFFDNHGPKSQSTGANSDKVADSDPHSELNGSLGPKTTEPLPEDKPEAHSAEVAREHTQSQTDVTHSETKLAKGSLPEGFFDN QEADLRARGIKIVKPDVKDEYKEFEKLIQEDLREVDDRLEEEEIDAAEKIEEAETVEQKTYMEKVELLKRRRMELESAKSAKRSKGRGAGSKVTKKESGD EEDSSSDGDSDGEGNFTVDWRAQHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	0	1
AT5G54850			unknown protein		Lus10011150 [exp]	1.0	0.9477
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	4.9	0.9121
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	7.1	0.9138
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	7.2	0.9048
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	7.5	0.8983
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	10.9	0.8989
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	11.4	0.8920
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	12.4	0.9037
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	13.0	0.8938
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	13.9	0.8999

Compare expression of checked genes

Lus10015686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.