Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02850 1139 / 0 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 1048 / 0 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G26650 374 / 2e-116 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 342 / 5e-104 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 332 / 4e-101 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G32500 329 / 3e-99 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 266 / 5e-78 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G32650 256 / 9e-75 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT4G18290 258 / 1e-74 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT2G14255 79 / 7e-15 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001999 [exp] 897 / 0 AT3G02850 970 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 813 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10019944 [exp] 376 / 2e-117 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 364 / 1e-112 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10019442 [exp] 353 / 6e-108 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 349 / 1e-106 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 349 / 2e-106 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 348 / 3e-106 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 332 / 1e-100 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135400 [exp] 1245 / 0 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 1227 / 0 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.012G043000 [exp] 977 / 0 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.018G071400 [exp] 374 / 3e-116 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 367 / 2e-113 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 362 / 1e-111 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 347 / 2e-106 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 288 / 4e-85 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 276 / 4e-82 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 270 / 7e-80 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015687 pacid=23147221 polypeptide=Lus10015687 locus=Lus10015687.g ID=Lus10015687.BGIv1.0 annot-version=v1.0 ATGACAAGCGAGGAGACAGCGGCGGAGAGGGCGGTGGAGAGGGTGGAAAAGGATGAGAATGAGGCGGCGGCGGCGAGGGAGGAGGAGGAAGAGGAATTTG AACTTCAGGATGTGAGGGAGAGATTGAGGAGAGGGAGCAGATTCAATCGGATCGAAAGCGACTTCGATTTAAGAGAAAGCGGAAGCAGCGGAGGAGGAGG ATCTGGCCTGAGTACAAGGTTCAGCCGTCAGTCTCTGATCGATGGATTCCATCACGTCTCCACCGGTCTCGTCATTCATCCCGACAACAGATGGTATCGA GCATGGTCGAAGTTCATACTGCTATGGGCAGTGTACTCGTCATTCTTCACGCCGATGGAGTTTGGATTCTTCAGGGGATTACCTGAGAATCTCTTCATTT TGGACATTGTTGGCCAGATTGCTTTCCTTTTCGACATTGTTTTCCAGTTCTTCATCTCCTACAGAGACCCGCAGACTTATCGTATGGTCTACAAGCGCGC CCCCATAGCTCTTCGGTATTTAAAATCTCATTTCATTATCGATTTGCTTTGTTGCATGCCTTGGGACATCATCTACAAGGCTTCTGGGCACAAGGAGGAA GTGAGGTATCTTCTGTGGATTAGGCTATGGCGAGTGCGAAGAGTTACGCATTTTTTCTACAGGATGGAGAAAGACATAAGGATTAATTATCTCTTCACTA GAATTATTAAGCTGATTGCAGTGGAGCTCTACTGTACACACACAGCAGCCTGCATTTTTTACTATTTAGCTACTACTCTTCCAGCTGCCAGTGAGGGTTA CACATGGATTGGAAGTTTGAAGATGGGGGATTACAGTTATGCGCAGTTTCGAGATATCGAGATCTGGAAACGGTATACCACATCTTTGTATTTCGCCATT GTCACTATGGCTACTGTTGGGTATGGAGATATACATGCTGTGAATATGAGGGAGATGATATTTGTGATGATATACGTATCGTTTGATATGATCCTGGGAG CTTATTTGATTGGTAACATGACTGCATTAATCGTGAAAGGATCCAAGACGGAGAAGTACAGGGATAAAATGACGGATCTCATCAAATATATGAACAGGAA TCGTCTCGGAAGGGATATTCGTAATCAGATTAAAGGCCATCTTCGGTTGCAGCATGAACGTAGCTATACCGAAGCTTCTGTTTTGCAGGACATTCCGATT TCCATTCGTGCCAAGATCTCCGAAACTTTGTTCCTTCCTATCGTTGAAAAGGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTTATCAATCAGATTGCGG TTAGGCTCCATGAAGAGTTTTTTCTTCCTGGAGAAGTGATATTAGAACAAGGAAGTGTAGTGGATCAACTATATTTTGTTTGCCAGGGTGCTCTGGAAGA GGTTGGGATGGTAGAAGATGGATCAGAAGAGACAGTTTCACTTCTATCACCAAACAGCTCCTTTGGAGAAATCTCGATCCTTTGCAACATTCCTCAACCA TATACTGTTCGAGTTTGCGAGTTATGCAGACTTCTGCGACTAGACAAACAGGCTTTCTCGGACATACTCGAGATATACTTCTATGACGGGCGAAAAATTC TGAACAACCTACTCGAGGCGAAGAAAGCACCGATCCGAGATAAGCAACTGGAATCGGATATCACGTTTCACATTGGAAAGCAAGAAGCTGAACTTGCTTT AAGAGTAAATAGTGCAGCTTATCATGGGGATCTTATCCAACTAAAGGGCTTCATTCGCGCCGGAGCCGATCCCAACAGAACTGATTACGATGGCAGATCA CCATTGCATCTTGCAGCATCAAGGGGTTATGAAGACATGGCAAGGTTCCTCATTCAAAAGGGAGTTGATGTGAACATGAAAGACAAATTCGGGAACACGC CTTTGATGGAAGCGATAAAATCCGGACACGATCGACTCGCATCATTACTTGTCGCCAAAGGCGCCTCCTTAAACATAGAGGATGCAGGTAGCTCCCTGTG CACGGCAGTTGCAAGGGGGGACTCTGATTTCCTCAAGAGGATTCTGGCCAACGGCGTCGATCCGAACTCGAAGGACTACGATCACCGGACTCCGCTCCAC GTAGCTTCCTCGGAAGGGCTGTTCTTAATGGCTAAGTTGCTGGTAGAAGCCGGCGCCAGTGTTTTCACAAAGGACAGATGGGGAAACACACCACTGGATG AAGGAAGGAGGTGTGGAAATAAGAACTTGATCAAGCTTTTGGAAGAGGCTAAGACTACACAGTTGGCAGAAATGCCTGATAGTAGTAGCTCTCAAGGAAC CAAAGGAAAACCCAGCTTGAGGAAATGCACGGTGTTCGGGTTTGCTCCATGGAGTCCAAAGGAGGAGAGGAGGGTCGGGATAGTGTTATGGGTGCCACAG TCCATTGACGAGCTTATAGAAGCTGCGGTGGAGTTGCTCGAGTTTCAAGCCGAAGGTGGTGATGGTGATGCTACTTGTGTGGTGACGGAAGATGGTGGCA GAGTTGTGGATGTAGATATGGTTGATGACGGTCAGAAACTGTATCTAATTAACCAAACCACACATAGCTGA
AA sequence Show only first row Show all	>Lus10015687 pacid=23147221 polypeptide=Lus10015687 locus=Lus10015687.g ID=Lus10015687.BGIv1.0 annot-version=v1.0 MTSEETAAERAVERVEKDENEAAAAREEEEEEFELQDVRERLRRGSRFNRIESDFDLRESGSSGGGGSGLSTRFSRQSLIDGFHHVSTGLVIHPDNRWYR AWSKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFISYRDPQTYRMVYKRAPIALRYLKSHFIIDLLCCMPWDIIYKASGHKEE VRYLLWIRLWRVRRVTHFFYRMEKDIRINYLFTRIIKLIAVELYCTHTAACIFYYLATTLPAASEGYTWIGSLKMGDYSYAQFRDIEIWKRYTTSLYFAI VTMATVGYGDIHAVNMREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTEKYRDKMTDLIKYMNRNRLGRDIRNQIKGHLRLQHERSYTEASVLQDIPI SIRAKISETLFLPIVEKVSLFKGCSSEFINQIAVRLHEEFFLPGEVILEQGSVVDQLYFVCQGALEEVGMVEDGSEETVSLLSPNSSFGEISILCNIPQP YTVRVCELCRLLRLDKQAFSDILEIYFYDGRKILNNLLEAKKAPIRDKQLESDITFHIGKQEAELALRVNSAAYHGDLIQLKGFIRAGADPNRTDYDGRS PLHLAASRGYEDMARFLIQKGVDVNMKDKFGNTPLMEAIKSGHDRLASLLVAKGASLNIEDAGSSLCTAVARGDSDFLKRILANGVDPNSKDYDHRTPLH VASSEGLFLMAKLLVEAGASVFTKDRWGNTPLDEGRRCGNKNLIKLLEEAKTTQLAEMPDSSSSQGTKGKPSLRKCTVFGFAPWSPKEERRVGIVLWVPQ SIDELIEAAVELLEFQAEGGDGDATCVVTEDGGRVVDVDMVDDGQKLYLINQTTHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10015687 [exp]	0	1
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	7.3	0.8441
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	19.0	0.8212
					Lus10006216 [exp]	22.0	0.7995
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	35.1	0.7751
AT5G39150			RmlC-like cupins superfamily p...		Lus10006543 [exp]	39.6	0.8008
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	39.6	0.8039
					Lus10001144 [exp]	42.1	0.7649
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10004780 [exp]	48.8	0.7765
AT1G11340			S-locus lectin protein kinase ...		Lus10034637 [exp]	51.2	0.7591
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	58.0	0.7683

Compare expression of checked genes

Lus10015687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.