Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34240 668 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT1G44170 630 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G36250 464 / 5e-160 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 158 / 5e-42 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 157 / 5e-42 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 145 / 9e-38 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 143 / 4e-37 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 130 / 3e-32 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 128 / 1e-31 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 123 / 5e-30 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037694 [exp] 941 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10029684 [exp] 644 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 624 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 615 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10042724 [exp] 525 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10002557 [exp] 458 / 4e-150 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10041806 [exp] 437 / 1e-149 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 431 / 5e-147 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 429 / 3e-146 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412900 [exp] 708 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 707 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.002G081800 [exp] 635 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G179300 [exp] 633 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G259100 [exp] 466 / 9e-161 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 460 / 1e-158 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 159 / 3e-42 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.015G070600 [exp] 150 / 2e-39 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 150 / 2e-39 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 142 / 2e-36 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10015688 pacid=23147247 polypeptide=Lus10015688 locus=Lus10015688.g ID=Lus10015688.BGIv1.0 annot-version=v1.0 ATGATTATTCTCTCACTGTTGGTACCGATTTCGAACTATAGATGCTCTGTAAGTGTGAAACCTGTGCTGCGGGAGGGAGAACAGAAGAATCAGCAGCAGC AAGGGATGCAATCGGCGACGTTTGGGGCAGAGGAGGCGACGTCGCTGGTGAAGAAGCTGAGGCAGAGCTTCAACTCCGGCAAGACAAAAAGTTACGAATG GAGAATTTCGCAGCTGAATGGGATCTCGAAGATGGTCGAGGAACGGGAAAGCGACATCGTTTCCGCCCTCTACGACGACCTCTCCAAGCCTTCCCTTGAA GCCTTCGTTGCTGAGATTTCAATGGCGAAGTCTGCCTGTAAGGAGGCAATAGAAGGACTCAAAGACTGGATGAAGCCTGAAACTGTCAAAACTACCATTT CAACGTTTCCTTCATCAGCAGAGATTGTACCAGAACCTTTGGGGGTAGTGCTCGTCATTTCCACCTGGAATTTTCCTTTCTTGCTGTCGATTGATCCAGT GATTGCAGCCATTTCGGCTGGGAACGCCGTGGTCCTGAAACCATCGGAGATAGCTCCGGCTACATCTTCACTCTTGTCAAAGCTACTACAAGAGTACTTG GACGAGTCGGCCGTTACAGTTTTCGAGGGGGCCATCCCCGAAACCACCGCTCTGCTACAGCAGCGGTGGGACAAGATTCTTTACACAGGGAGTGCTAAAG TGGGCAGGATTGTGATGGCTGCCGCGGCAAAGCACCTCACTCCGGTTGTCCTCGAACTCGGTGGGAAATGCCCGGCGGTTGTCGATTCGAATGTGAAACT AGAGGTTGCAGTGAGGAGGATCATAGCAGGGAAATGGCAATGCAACAATGGACAGGCTTGCATTGGAGTTGATTACATCATTACAACCAAAGATTTTGCT CCCAAGTTGATAGAAGGCCTGAAGAAAGGGATCAAAGATTTCTTTGGGGAGGACGCGATGGAATCGAAGGACATTTCGAGAATCGTGAGCCTTACACAGT TCAAACGCTTGGTCGGGCTTCTGGAAGAGGAGAACGTCTCCGACAAAATCGTTCTCGGAGGCCGAACTGATGTCGATAGATTGAAGATATCTCCAACCAT ACTGCTGGATCCTCCTCAGGAGTCTCAAATCATGCAGGAAGAGATCTTTGGACCGTTGCTCCCCATTGTCACGGTGGAGAACTTGAGAGAGTCATTTCAA GTGATAAATTCAAAACCAAAGCCTCTAGCTGCATACTTATTCACAGATGATGAGCAGCTCAAGCAGGAATTTGTGCAGAATGTGCCTTCAGGAGGAATGT CCATCAACGACACAATCCTACATGTTACGGTGCACACGCTGCCGTTCGGAGGAGTAGGGGAGAGTGGGATGGGTTCGTACCACGGGAAGTACTCGTTCGA CGCATTTAGCCACAAGAAGTCGGTGTTGTACAGGAGCTGGAGTGGAGATGCATCACTGAGGTATCCACCTTATACTCCTCAGAAGAAATCGATGATGAAG GGACTTATGAACGGTGGCCTGCCTGGGTTATTATCTGCTTGGCTCGGAGGATCGTCCTCGAACGAATGA
AA sequence Show only first row Show all	>Lus10015688 pacid=23147247 polypeptide=Lus10015688 locus=Lus10015688.g ID=Lus10015688.BGIv1.0 annot-version=v1.0 MIILSLLVPISNYRCSVSVKPVLREGEQKNQQQQGMQSATFGAEEATSLVKKLRQSFNSGKTKSYEWRISQLNGISKMVEERESDIVSALYDDLSKPSLE AFVAEISMAKSACKEAIEGLKDWMKPETVKTTISTFPSSAEIVPEPLGVVLVISTWNFPFLLSIDPVIAAISAGNAVVLKPSEIAPATSSLLSKLLQEYL DESAVTVFEGAIPETTALLQQRWDKILYTGSAKVGRIVMAAAAKHLTPVVLELGGKCPAVVDSNVKLEVAVRRIIAGKWQCNNGQACIGVDYIITTKDFA PKLIEGLKKGIKDFFGEDAMESKDISRIVSLTQFKRLVGLLEEENVSDKIVLGGRTDVDRLKISPTILLDPPQESQIMQEEIFGPLLPIVTVENLRESFQ VINSKPKPLAAYLFTDDEQLKQEFVQNVPSGGMSINDTILHVTVHTLPFGGVGESGMGSYHGKYSFDAFSHKKSVLYRSWSGDASLRYPPYTPQKKSMMK GLMNGGLPGLLSAWLGGSSSNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	0	1
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	1.4	0.9106
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10016649 [exp]	3.5	0.8820
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	3.9	0.8871
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	4.2	0.8927
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	6.2	0.8914
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	9.4	0.8893
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	9.8	0.8807
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	12.7	0.8383
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	13.4	0.8697
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	14.1	0.8431

Compare expression of checked genes

Lus10015688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.