Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63950 1109 / 0 CHR24 chromatin remodeling 24 (.1) AT2G18760 356 / 1e-104 CHR8 chromatin remodeling 8 (.1) AT1G03750 262 / 1e-73 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT3G54280 257 / 6e-70 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT3G19210 245 / 1e-67 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT5G66750 236 / 2e-65 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G18620 236 / 5e-64 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 236 / 5e-64 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G19310 231 / 3e-62 Homeotic gene regulator (.1) AT2G28290 232 / 1e-61 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037696 [exp] 2063 / 0 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10033909 [exp] 358 / 3e-105 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003543 [exp] 356 / 2e-104 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10013625 [exp] 268 / 2e-73 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10033669 [exp] 253 / 2e-70 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10014047 [exp] 243 / 2e-66 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 241 / 1e-65 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10041735 [exp] 234 / 2e-64 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10034064 [exp] 236 / 1e-63 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066600 [exp] 1306 / 0 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 1278 / 0 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G226500 [exp] 358 / 6e-106 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.013G068400 [exp] 259 / 1e-70 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Potri.017G012400 [exp] 252 / 7e-70 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.019G129900 [exp] 239 / 2e-66 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 239 / 4e-66 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G149900 [exp] 243 / 7e-66 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 239 / 1e-64 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.003G110100 [exp] 239 / 3e-64 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015690 pacid=23147193 polypeptide=Lus10015690 locus=Lus10015690.g ID=Lus10015690.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGAAGCAAGAAATCTCACCGGCAACATCCGGTGAGTCTGAACGAGAGTCACTATCGCCTCCTTCAAGACCTCTCCGCTCCTCCTAAGCAAT CATTTGCAGATGAACCGCAAGAGACGAAGAAGAAGATCGAAGGACGCCGTCGTCTCTGCAAGCCGCAATCGAAGGATGACGATAGTGACGATGATCATGT CAACTTGTTCGCTGGCATCACCGATTTCGATTCTCCTCCAGTTGCTGGCCAAGAGATGCCACCGATGATGAAGGAGATGGAAAGACCACGTAATCTCTGG CAAGTAGAATCGGAGGAAAATGAGCCTGAGGATGATAATATTCCCTCGTTCTCTGGCATTACTGATTTTGATTCTCATGAAGAAGAAAAGGAAAATAAGG TTAGGATTGAAGGCAGGAGGCGTCTATGCAAACTCTCTCATCAGGAGCAGGAAGATGTGCAAGATGAACCTACATTCACTGCAATTACAGATTTCGATTC ACCGCTGCCTTCTAAAGCTGAAGGCAGAAGTGATGATGATCCCAATGGTGACATCAGGGATATTCTGAATGGCTTGACTTCAAGGCTTGACCTTCTCTCA ATTGAGAAAAAGAAGGAACCAGGAAGATCTGGAAACTTGACCAATGCGAGAGCTGAGTCATGTACTTCTGGTACATCTCAAACATCAAAGGTAGCTGGGT TCAATTGCATGAGAGCTGTGGATGAAGGTACTGCGGAAAGCAATTCGTTCAAGTGGCTTGGAGATGACAGCTCTGTTAAAATGGTTGGTGAGACCAAGGC AACTCATCGGCTCTTAAATGAAAATGATGTCGGAAGGACTGGGAAGTCTTTGGCTTTTGAAGATCAACTTTCTGATTTCAAGTTTCAAAGTAAAAAGGCA AGTGATAGAAGTGTTGAGCCTGTTGGGCAGAGCTATGCAGCCAAAAGTGAATTGAAGTCTGGGTATGACAGATTGAGATACGCAGGCCGATCTAATATGG GTAACCTTAGGGATGAAGAGGACTGTGTAGTTGTCAGTGGTAAGAACTTGGCCAAAGAATCCAGGCGACCCAATAATCAAGTGAAGCCACCCACTCACTC TCAATCAATCAACGTGTGCAATGAGGACGAAGGAGCCATTACTCTGAGTGACTCACGATATGCATACCGACTACCAGGGAAAATTTCGACCATGTTGTTT CCACATCAGCGCGAGGGATTGAAGTGGCTGTGGTCATTGCACTGTCAGGGTAAAGGTGGAATATTGGGAGACGACATGGGGTTGGGGAAAACCATGCAGA TCTGTGGCTTTTTAGCTGGGCTTTTCCATTCCAAACTGATTAAAAGAGCGTTGGTTGTCGCCCCTAAAACATTGCTTGACCATTGGATCAAAGAACTATC TCTTGTAGACCTCTCTCGGGATACTAAAGAATACTTTGGGACTTCTGTAAAGGCTCGCCAATATGAATTGCAACATATTCTTCAGTACGGCGGTATTCTT CTTACTACTTACGACATAGTACGCAACAACTCAAAAGCATTGCGGGGGGATGGTTTATGGACTGACCATGATAGCGAAGATGGTTTCCTGTGGGATTACA TGATTCTTGATGAGGGCCATCTGATAAAGAATCCCAGTACTCAGAGGGCTAAAAGCTTGCTTGAGATAGAGAGTGCTCATTGCATTGTCGTTAGTGGAAC ACCTATTCAAAACAATCTCAAGGAACTCTGGGCTCTATTCAACTTTTGCTGCCCAGATCTACTTGGTGACAAAAAATGGTTCAAAGAAAAATATGAACAT CCCATACTTCGTGGAAATGACAAGAATGCTTCTGATCGGGATAAGCATATCGGTTCGAGAGTTGCTAAGGAACTCAGAGAACGGATCCAACCTTATTTCT TGCGTCGCTTAAAGAGTGAAGTCTTCAAGGAGGATGATAATGAAACGGCTAAACTCTCGAAAAAGAATGAACTCATTGTCTGGCTAAAATTGACTGATTG TCAGAGACAACTTTACGAAGCATTTTTGCAGAGTGAGCTTGTACTTTCAGCTTTTGATGGGTCGCCCCTGGCTGCATTAACGATTCTGAAAAAGATATGT GATCATCCCCTTCTCTTAACAAAGCGAGCTGCTGAGGATGTACTTGAAGGAATGGAGACTGGTCTAAATCCAGAGGATGCTGGCCTGGCTGAAAGATTGG CGATGCATGTAGCAGATATTGCTGAGAGAAATGAGTTCCAAGAGACACATGACAACATTTCTTGCAAAATATATTTCATCATGTCACTGCTGGATGACCT CATTGCTAAGGGTCACCGTGTGCTCATATTTTCTCAAACACGGAAGATGCTCGATCTTATTCAGGCTGCTATAGCCTCCAGTGGTTACAAGTATTTAAGA ATCGATGGCACTACAAAGTCCAGTGATAGAGTGAAGACTGTGAATGACTTTCAAGCTGGCAACCACGCTCCTATATTCCTCCTGACATCTCAGGTTGGAG GTCTTGGTCTCACCCTGACTAAAGCAGATCGTGTAATTGTAGCTGATCCTGCTTGGAATCCAAGCACGGACAATCAAAGCGTTGATCGGGCGTATCGTAT TGGTCAGCAAAAAGATGTCATTGTGTATCGATTAATGACTTGTGGGACAGTCGAGGAGAAAATCTACAGGAAGCAGATTTATAAGGGCGGGTTGTTTAAA ACTGCAACCGAGCAAAAAGAACAGGTCCGGTACTTCAGTCAACAGGATCTGAGGGAATTATTCAGTCTTCCGAAGCATGGATTTGATGTTTCCCTCACAC AGCAGCAATTGCATGAAGAACATGACAAACAGCACAAAATGGAGGAAAAGTTGGAAGCTCACATAAAGTTCTTGGAGACAAAGGGCATAGCAGGAGTTAG CCACCATAGCTTACTTTTCTCCAAGACTGCACCACCTGTACCAGTAGTTGAAGAAGACGATCCAGAAGCAAGGATGAGAGCAGCTGCTATGATGTATAGG GGTAATTCATCAAGAACACAAGAACGAGATGTTGATGGAGGGGCTGCATATGCTTTCAACCCAAAGGACGTAAACCGAAACACGAAGAGCTCTTCGCCTA CTAGTCCAGGGAAGCTGACCGAGTCCGATATCAAATCTCGAATCAACCGGCTGTCGCATTTGCTTGGAAACAGGAATATAGTATCAGGATTACCTGATAG AGGAGAGAAACTGAGGAAGCAAATTGGGGATCTGAACATGGAACTTGAGAAGATTCGTGTGGAGAAAGAAGTCATTGACTTGGATGACTTGAGTGAGGAG CTTCACAAGTCTTTCAATATTTGA
AA sequence Show only first row Show all	>Lus10015690 pacid=23147193 polypeptide=Lus10015690 locus=Lus10015690.g ID=Lus10015690.BGIv1.0 annot-version=v1.0 MVGGSKKSHRQHPVSLNESHYRLLQDLSAPPKQSFADEPQETKKKIEGRRRLCKPQSKDDDSDDDHVNLFAGITDFDSPPVAGQEMPPMMKEMERPRNLW QVESEENEPEDDNIPSFSGITDFDSHEEEKENKVRIEGRRRLCKLSHQEQEDVQDEPTFTAITDFDSPLPSKAEGRSDDDPNGDIRDILNGLTSRLDLLS IEKKKEPGRSGNLTNARAESCTSGTSQTSKVAGFNCMRAVDEGTAESNSFKWLGDDSSVKMVGETKATHRLLNENDVGRTGKSLAFEDQLSDFKFQSKKA SDRSVEPVGQSYAAKSELKSGYDRLRYAGRSNMGNLRDEEDCVVVSGKNLAKESRRPNNQVKPPTHSQSINVCNEDEGAITLSDSRYAYRLPGKISTMLF PHQREGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSKLIKRALVVAPKTLLDHWIKELSLVDLSRDTKEYFGTSVKARQYELQHILQYGGIL LTTYDIVRNNSKALRGDGLWTDHDSEDGFLWDYMILDEGHLIKNPSTQRAKSLLEIESAHCIVVSGTPIQNNLKELWALFNFCCPDLLGDKKWFKEKYEH PILRGNDKNASDRDKHIGSRVAKELRERIQPYFLRRLKSEVFKEDDNETAKLSKKNELIVWLKLTDCQRQLYEAFLQSELVLSAFDGSPLAALTILKKIC DHPLLLTKRAAEDVLEGMETGLNPEDAGLAERLAMHVADIAERNEFQETHDNISCKIYFIMSLLDDLIAKGHRVLIFSQTRKMLDLIQAAIASSGYKYLR IDGTTKSSDRVKTVNDFQAGNHAPIFLLTSQVGGLGLTLTKADRVIVADPAWNPSTDNQSVDRAYRIGQQKDVIVYRLMTCGTVEEKIYRKQIYKGGLFK TATEQKEQVRYFSQQDLRELFSLPKHGFDVSLTQQQLHEEHDKQHKMEEKLEAHIKFLETKGIAGVSHHSLLFSKTAPPVPVVEEDDPEARMRAAAMMYR GNSSRTQERDVDGGAAYAFNPKDVNRNTKSSSPTSPGKLTESDIKSRINRLSHLLGNRNIVSGLPDRGEKLRKQIGDLNMELEKIRVEKEVIDLDDLSEE LHKSFNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Lus10015690 [exp]	0	1
AT1G06660		JASON	JASON, unknown protein		Lus10020732 [exp]	5.7	0.9343
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	7.5	0.9259
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	10.8	0.9286
AT5G15510			TPX2 (targeting protein for Xk...		Lus10010706 [exp]	14.1	0.9283
AT4G31880			unknown protein		Lus10018332 [exp]	15.3	0.9170
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	20.2	0.8394
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	20.4	0.8624
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	21.2	0.9217
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	25.5	0.9231
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	25.9	0.8333

Compare expression of checked genes

Lus10015690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.