Plant FIBer expression Database

Lus10015691 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39450 533 / 0 F-box family protein (.1)
AT5G39460 462 / 5e-157 F-box family protein (.1)
AT5G39480 446 / 9e-151 F-box family protein (.1)
AT5G39490 433 / 1e-145 F-box family protein (.1)
AT5G39470 73 / 7e-15 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037697
[exp]
1011 / 0 AT5G39450 544 / 0.0 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G102000
[exp]
709 / 0 AT5G39450 572 / 0.0 F-box family protein (.1)
Potri.005G067300
[exp]
705 / 0 AT5G39450 568 / 0.0 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Lus10015691 pacid=23147236 polypeptide=Lus10015691 locus=Lus10015691.g ID=Lus10015691.BGIv1.0 annot-version=v1.0
ATGTCAACTGAATTTAGTGGATTGAACTTGTTTCTGGCTTTGCCAGATGACGTGTTTGCTATCATATCTCGCTCCCTATCGCCGTTGGACGTTTGCAATC
TCAGCCTTTCATGCCGGAGCTTACGAGATTTTTCATCATCTGAGAAAGTCTGGCTCGCTCAATGTGGAATCGTTGGGGTTCTTCCCCAAACTGAACTCAT
CAAGTGGAGGAAAGGCGTTTCGTCGTACAAGTCCCTCTGCCGATTCCTTATTACTGTGGTTAAGCCACTGGTTGGAATTTGGGTTCATCAGAACCCTGAG
CTCGGCAATGTAGTGTACGTAATGCCTGGTTTCGTATCGGTCGTTGGATGTCGAGTTATACCGCAAGAGCTCGGTCCTTTAGGGATCGAAGACGGCCCTA
TTCTCTGGTCGCCGGTGTTTGAAGTAATAAGTGATCTTGATGGTTCTTCTTTGTTCTTTCTTCATGGAAGGGAAAAAGGAACTGACTATGTGTATCCTGG
TTCGTTGAAACCGGCTGATCGGAACTGCAATGTGCTTTTGCTCGAGGTTGAACCTCGCGAGCAGAAGAAGAGACTGCTGCTGCATAGTCAGAGCTTTGCT
TGCATTTCAGAACATCCGTCGAGCAAAGTTTCGAGGTCGAGCAGTGGATTGTCGAAGTCGCATCGGGTAGTGGACGTCAAGCCGAGTTTTAGCCGGTTGG
GGTTTAATGATAGGAGGAAGCTCATCGAGGCTGTGACTCGAAATGTTCATCGAGTTTTACCAGATTCAACGAGCGGACCGCTTTTTCTTCCTCTTACGAG
GAGAAGTGCTGATGAAGATAGCTCGAGTTTGTGTCGACGTAGATCGTTGCTTCTGGACATACACAAGCTCGGTGGCGATGGCATTGATTGGGAATCGGTT
CCGGAACTGCTTTCTGATCGCATTGTCAATGGATCAAAAAACATAGCCCGGTCGGGTGTAAATGGAGATGGTTATACACAATCCGTCGCGAAGAAAACAC
TCGGAGGATATTTACGAGCTAGTGTACGACAGATTTTGGGGAAATCGTCGCCTTCTCATGTACGCTCGAAGAGTTCGAACGGTGAGAATAAGCACGCGAG
CATTCACGATTTCTTACTATCGGGCGATGCGATAGGATTGGCATTACTTCCCGTAAAGTTGAGGTTGTCTTCGTACCGAGCGTGGCCAAATATGCATGAT
AGCCGGTTCGCTCTGTACAAGTTACCTTTGTGGCATCCCCGACCCGACCAAAAGTACGCCGGTTTATGGGGTGGGACTTTTGGTTGGCCACCCGGAAAGC
CGTCCGAGGATAAACCCGGGAAAGCTCTCTTCTTTCTGTTGTTATCTTACGACGAATCCGATGGGGTCCACCGGAATCTCGTGGCTACGAAGATACTCGA
AGGCACTCACTATGTACTCCATCCAAATGGCTCGGCGATGTTTGTAGTGAATCTAGACGAGCCTTCCGAGGATCCATTTCCTTGGGATCCGGTAAGTGTG
GAGTATTCGTTTTCAGGGGAAGGTATCGCGCACGGATATGGGTTCAGGTATCCCGGGTCGAAACCCGGATCACTGTTTGTGATTCAAAACGGCGTGCTTG
CTTTTGTGTGGAAAGAGTCTAGAGCTGTGTTGACGATGCAGCGGCTGAACTTGGAGGAGCTCGTGAGGAAAGGCGAACAAGTGCCCGCACTTACTCCCAT
TGCAAACTTTGCGTACTTGACAAAGTCGTACTCGAATGTGTTTGTCGGGTTCTCGAGTGGTTCTGCTTGCGCCTCGTCACTGAGGTTCGACTTCTTTTTC
CCAAACATCATTTGTGTCTAA
AA sequence
>Lus10015691 pacid=23147236 polypeptide=Lus10015691 locus=Lus10015691.g ID=Lus10015691.BGIv1.0 annot-version=v1.0
MSTEFSGLNLFLALPDDVFAIISRSLSPLDVCNLSLSCRSLRDFSSSEKVWLAQCGIVGVLPQTELIKWRKGVSSYKSLCRFLITVVKPLVGIWVHQNPE
LGNVVYVMPGFVSVVGCRVIPQELGPLGIEDGPILWSPVFEVISDLDGSSLFFLHGREKGTDYVYPGSLKPADRNCNVLLLEVEPREQKKRLLLHSQSFA
CISEHPSSKVSRSSSGLSKSHRVVDVKPSFSRLGFNDRRKLIEAVTRNVHRVLPDSTSGPLFLPLTRRSADEDSSSLCRRRSLLLDIHKLGGDGIDWESV
PELLSDRIVNGSKNIARSGVNGDGYTQSVAKKTLGGYLRASVRQILGKSSPSHVRSKSSNGENKHASIHDFLLSGDAIGLALLPVKLRLSSYRAWPNMHD
SRFALYKLPLWHPRPDQKYAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYDESDGVHRNLVATKILEGTHYVLHPNGSAMFVVNLDEPSEDPFPWDPVSV
EYSFSGEGIAHGYGFRYPGSKPGSLFVIQNGVLAFVWKESRAVLTMQRLNLEELVRKGEQVPALTPIANFAYLTKSYSNVFVGFSSGSACASSLRFDFFF
PNIICV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G39450 F-box family protein (.1) Lus10015691
[exp]
0 1
AT5G39450 F-box family protein (.1) Lus10037697
[exp]
1.0 0.7860
AT5G56240 unknown protein Lus10000240
[exp]
3.9 0.7419
AT1G13340 Regulator of Vps4 activity in ... Lus10034303
[exp]
14.1 0.7298
AT1G67570 Protein of unknown function (D... Lus10006430
[exp]
15.1 0.7399
AT1G47240 ATNRAMP2, NRAMP... NRAMP metal ion transporter 2 ... Lus10010395
[exp]
15.6 0.7774
AT1G62960 ACS10 ACC synthase 10 (.1) Lus10006676
[exp]
20.8 0.7350
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Lus10003196
[exp]
24.9 0.7287
AT2G24820 AtTic55, TIC55-... translocon at the inner envelo... Lus10026246
[exp]
25.9 0.7281
AT2G36430 Plant protein of unknown funct... Lus10027720
[exp]
27.3 0.7001
AT3G26600 ARO4 armadillo repeat only 4 (.1) Lus10026695
[exp]
27.9 0.7103

Lus10015691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.