Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64360 155 / 2e-41 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT5G09540 145 / 3e-39 Chaperone DnaJ-domain superfamily protein (.1) AT1G62970 150 / 4e-38 Chaperone DnaJ-domain superfamily protein (.1) AT2G01710 123 / 6e-31 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 81 / 7e-16 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT4G19570 77 / 1e-14 Chaperone DnaJ-domain superfamily protein (.1) AT2G25560 76 / 3e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 74 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 74 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 72 / 9e-13 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037698 [exp] 488 / 4e-164 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10009275 [exp] 132 / 2e-33 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10015891 [exp] 131 / 3e-33 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10012736 [exp] 80 / 4e-16 AT2G01710 134 / 8e-37 Chaperone DnaJ-domain superfamily protein (.1) Lus10006380 [exp] 82 / 5e-16 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 82 / 8e-16 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 79 / 3e-15 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 77 / 1e-14 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 76 / 4e-14 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G044600 [exp] 227 / 6e-66 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.007G114800 [exp] 221 / 8e-64 AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G156100 [exp] 142 / 3e-37 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G105500 [exp] 128 / 2e-32 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G020200 [exp] 82 / 8e-16 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 81 / 9e-16 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 79 / 6e-15 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 77 / 2e-14 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 77 / 2e-14 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 77 / 2e-14 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10015692 pacid=23147231 polypeptide=Lus10015692 locus=Lus10015692.g ID=Lus10015692.BGIv1.0 annot-version=v1.0 ATGGATGGCGGCGGGGGATACAGAGTGGAGGCGGAGCGGTGGCTGACGATCTCCGAGAAGCTACTCAACGCGCGCGATCTCCAAGGAGCCAAGACCTTCG CGATCCGCGCCCGGGAATCCGACCCGAGGCTCCTCCACTTCGCGGACCAAATCATAGCCATCGCTGATACTCTCCTCGCCGCCGAAATCAGGGTGAAAGA CCACTACGGAGCCGCCACCGACACTCACGACTACTACGCCCTTCTCCAGCTCCCGCGGCTCACTCAATCGATGGAGCTAATCGCGACTCAGTACAGAAAG CTGGCTCTCCTCTTAAACCCTAGCAGGAACCGCCTCGCCTTCGCCGACCACTCCTTCCGGCTGGTTTCCGACGCCTGGATGCTCTTCTCCAACCCTTCCA AGAAGGCAATGTACGATTCGTTGCTTCAACCGGTTCAATTAGGTCTCTCCGCCGCCCAATTCGCGAATCAGGGCTTCGTTGACCAATCGCAGTTGCCTCA ATCGTCGGTCTCTAGCAGCTCTAGAATGATGAGTAGGGATGGTTCGGTTGAACCGGTCACGAATCAGTGGGTTCCTGTATCGACTCAGTCGACTCGTCAA TCGACTCAGGTTGAGTATCAGTTCACTGACACTGCTGCAACTCAGCATTTCCTTCCTCAGCCAACTAAACCGTTAGCTCAACAAAAGCAGCCTCCGCCTC CTCCGCCACCTCAGCAACATCAGCCTCCTCCTCCGCCGTCACCTCAGCCTCCTACTGAGCCCCCTAGAGCTACTCCTCCGGTATGGATCTCTCAGTCTCA GCCTCTGGATAAGCCAGCAGCTCCCGAAGTAGCTGCAGAATCTAGCAGACCAGCAGCTCCCAAAGTAACTGCAGAATCTAGCAGACCAGCAGCTCCCAAA GTAGCTGCAGAATCTAGCAGATCAGCAGCTCCAAAAGTAGTTGCAGAATCTAGCAGACCAGCAACTAAGTCGGCACCAATTGTAACCCCACCGCCGCTGC ACCAGAAGCCACCGGAACCATCGCCGCCGGTGAAGCAGAAGCAGCACCCAGTAGCAGCAGCGGTGGAGAATCAACCTCAGGCTCAATCTCAGGCTCAAGG GCCGAGTTTCTGGACTGCATGTCCGTATTGCTACGTGATGTACGAATATCCAAAGGTATATGAAGAATGTGCATTGAAATGTCAGACTTGTAAGAGAGGG TTTCATGCGGTGAAAGTGCCATCGCCGCCTGTGTCTGGTAAAGATACATACTTTTGCTGTTGGGGGTTCTTCCCGCTAGGGTATTCAGGTGGGGGGATGA AGTTTGGGTTAGGGGGTAGTAATTGGTCACCCTTTTCAGCAATGTTCTCTACGCCATTGCAACCCGGCGGGCAAATGTCTTCTCCTGCTACTGCTGCTGC TGCGGCTGCTGGTAAGGGTAAAACGATTTACAAATACGATGTTTTCATAGAGATTTCTGACCTAAGTAGTGATGATGATAAGTCTGATTCTGATGATGAT GACTGGGATAGGACTCAGAAGAAACTCCCCAAACTTCCCACCAACAGCAACAACAAAAGGCCAAGAGGGAGACCCCCTAGTAAGAATGTGAAGAAATCGG CATCGTCAGGGGAGAAAGCAAGGAATAATGTAGTAGTAGATGGTAAGGGAGAAGGAGGGAGTAGTAGTGGGAAAAAGAGTAAAGGAGGAGCAAAGGAGAT GGGGAAGTTGGATTTGAATGTTATGTTCAGTAATGAAGGTGATGAGGCTTCATTACCAGCTGGTGAAAGGAATGGAAGTGGGCATCATGGTGTGGAAGAT AACATTGAAGGGATCAGCTTTTTTGAAGGTCTTGATGAGTTCCTCAGCAGTTTGCCGATACTGTCTGTCGTCGGAGACGATACAAACAAGGTCAAAGCGA CCTAG
AA sequence Show only first row Show all	>Lus10015692 pacid=23147231 polypeptide=Lus10015692 locus=Lus10015692.g ID=Lus10015692.BGIv1.0 annot-version=v1.0 MDGGGGYRVEAERWLTISEKLLNARDLQGAKTFAIRARESDPRLLHFADQIIAIADTLLAAEIRVKDHYGAATDTHDYYALLQLPRLTQSMELIATQYRK LALLLNPSRNRLAFADHSFRLVSDAWMLFSNPSKKAMYDSLLQPVQLGLSAAQFANQGFVDQSQLPQSSVSSSSRMMSRDGSVEPVTNQWVPVSTQSTRQ STQVEYQFTDTAATQHFLPQPTKPLAQQKQPPPPPPPQQHQPPPPPSPQPPTEPPRATPPVWISQSQPLDKPAAPEVAAESSRPAAPKVTAESSRPAAPK VAAESSRSAAPKVVAESSRPATKSAPIVTPPPLHQKPPEPSPPVKQKQHPVAAAVENQPQAQSQAQGPSFWTACPYCYVMYEYPKVYEECALKCQTCKRG FHAVKVPSPPVSGKDTYFCCWGFFPLGYSGGGMKFGLGGSNWSPFSAMFSTPLQPGGQMSSPATAAAAAAGKGKTIYKYDVFIEISDLSSDDDKSDSDDD DWDRTQKKLPKLPTNSNNKRPRGRPPSKNVKKSASSGEKARNNVVVDGKGEGGSSSGKKSKGGAKEMGKLDLNVMFSNEGDEASLPAGERNGSGHHGVED NIEGISFFEGLDEFLSSLPILSVVGDDTNKVKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	0	1
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10037698 [exp]	1.0	0.9047
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	2.0	0.8491
AT5G37930			Protein with RING/U-box and TR...		Lus10009111 [exp]	2.8	0.8626
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	3.9	0.8493
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	5.5	0.8188
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	10.9	0.8329
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008927 [exp]	11.2	0.8434
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10040422 [exp]	12.9	0.7305
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10033591 [exp]	17.0	0.7643
AT3G58110			unknown protein		Lus10039903 [exp]	17.2	0.7639

Compare expression of checked genes

Lus10015692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.