Plant FIBer expression Database

Lus10015695 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12650 177 / 2e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037700
[exp]
312 / 1e-108 AT3G12650 199 / 8e-64 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G063700
[exp]
204 / 7e-65 AT3G12650 192 / 7e-60 unknown protein
Potri.001G269000
[exp]
201 / 1e-63 AT3G12650 140 / 1e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10015695 pacid=23147190 polypeptide=Lus10015695 locus=Lus10015695.g ID=Lus10015695.BGIv1.0 annot-version=v1.0
ATGGCGGCGGCCATTTTCGCCCGCAGACTCTCCTCCGCCTTCCGTAAACCTCCTCCTTCCATTTGCTCACTCTTCACAATCCGAACCACCATAAACTCTT
CTCCCGCCTCCGATCCGATCGCCGCATTAAAATCGGATCATCATCATCCCTCCAATTCCAATCCATCCTTCCCCCGATCGTACTCCAGCAGCTCAGAGTC
GCAACCGGCTCCCCCTCAGCCGAATGAGTATCCGAGCAAGAACCCAGACTTCAAGCACCAGGAGATCGAAGGCCCGACAGTAGATCGAGACCTCTCGCCT
CTCGCCAACGAAACCAGAACAGTTCTCGAGCGGATGATGAAGAACATCTACAGCCTCAGCAGAGTGATGGCTGCTCTCGGCCTGCTCCAGCTAGGGATCG
GCGCTTGGATCTCTTACACTACGATGGCGATCACGGAAGTTTCTGTTCAGAGCTGTGTGGCGTTTGGATTCCCGTTCGCGCTGGCGTTCATGCTGAGGCA
GTCGGTGAAGGCTATGTACTTCTTTAAGAAGATGGAGGAGCAAGGCAGGCTCCAGATTTTAACGCTGGCGCTCCAGGTTGCTAAGAACTTGAATGTGTTC
TTCGTTAGAGCTCGGATTGCTACTGTGATGTGCATCGTTGGGATGTCTCTTGGAATGGCGTTCGCCTTGTTCCCGAAGTGA
AA sequence
>Lus10015695 pacid=23147190 polypeptide=Lus10015695 locus=Lus10015695.g ID=Lus10015695.BGIv1.0 annot-version=v1.0
MAAAIFARRLSSAFRKPPPSICSLFTIRTTINSSPASDPIAALKSDHHHPSNSNPSFPRSYSSSSESQPAPPQPNEYPSKNPDFKHQEIEGPTVDRDLSP
LANETRTVLERMMKNIYSLSRVMAALGLLQLGIGAWISYTTMAITEVSVQSCVAFGFPFALAFMLRQSVKAMYFFKKMEEQGRLQILTLALQVAKNLNVF
FVRARIATVMCIVGMSLGMAFALFPK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12650 unknown protein Lus10015695
[exp]
0 1
AT2G20760 Clathrin light chain protein (... Lus10018480
[exp]
2.2 0.9204
AT2G26920 Ubiquitin-associated/translati... Lus10036096
[exp]
3.2 0.9065
AT3G22110 PAC1 20S proteasome alpha subunit C... Lus10042145
[exp]
5.3 0.8972
AT5G11770 NADH-ubiquinone oxidoreductase... Lus10032155
[exp]
8.1 0.8941
Lus10037253
[exp]
8.5 0.8836
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Lus10016645
[exp]
10.2 0.8873
AT4G35630 PSAT phosphoserine aminotransferase... Lus10039587
[exp]
11.0 0.8864
AT5G13890 Family of unknown function (DU... Lus10012588
[exp]
12.0 0.9061
AT3G61790 Protein with RING/U-box and TR... Lus10030248
[exp]
15.0 0.8324
AT3G12650 unknown protein Lus10037700
[exp]
16.3 0.8787

Lus10015695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.