Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12640 419 / 7e-137 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G65260 76 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G51120 73 / 3e-14 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G10350 67 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G24350 58 / 1e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 54 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22330 54 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 52 / 1e-06 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G78260 51 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 51 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037701 [exp] 1236 / 0 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 73 / 1e-14 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 72 / 2e-14 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032510 [exp] 72 / 7e-14 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 74 / 3e-13 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10043008 [exp] 68 / 1e-12 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040636 [exp] 60 / 8e-09 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10018277 [exp] 57 / 5e-08 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10037960 [exp] 55 / 9e-08 AT3G10400 240 / 2e-79 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269200 [exp] 651 / 0 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 620 / 0 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 94 / 1e-21 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G073200 [exp] 80 / 1e-16 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.012G115100 [exp] 78 / 5e-16 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G095800 [exp] 74 / 8e-15 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G110800 [exp] 74 / 2e-14 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.001G311600 [exp] 72 / 5e-14 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G079800 [exp] 72 / 8e-13 AT2G24350 102 / 8e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G051600 [exp] 68 / 1e-12 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10015696 pacid=23147224 polypeptide=Lus10015696 locus=Lus10015696.g ID=Lus10015696.BGIv1.0 annot-version=v1.0 ATGTCTGGAGGAAACTGGAGCGGTTTGGCTACTTATCAATCTTCATCACAATTCACACAACCCTCAGCTGGTGAGGGGGTTTTCCATGAAACCCCGAATT TCATTCCATTCAATCTCCGTCGCCTTTCCTTTTCCGGGAACAATCCTCAGCTCTGTCGGTATAATCTGCCGCCGCATTACTCTGTAACCGACGAGCATCA TCCCGGCCTCCACTCTATTAGGGTTCTGATTGAAGAGATGGGGAGTGTTGATCGAGTTGAGGATCGGACATTTAGGGTTAACTTCTCCGACGATGGAGTC GGACGGCTGCGAGAAAGAGTGATGGATAAGCTCAAGGAGTTCATGGGCGATTACACGGATGACACTCTCGTGGAATATGTTATTGTGTTACTGAGGAATG GGAGAAACAAACAAGAAGCAAAGAATGAATTGGATGTTTTTCTGGGAGATGACAGTGATTCCTTTGTTACATGGTTGTGGGATCACCTAGCTTCAAGTAT CAACTTGTATGCGAGTCATAGTGACACTGACATGACTAAAAAAACTGGAACAAGGAGCTCTTTAGGAGCTGAGCTTGTTGGAGACGAATCCCATGCGGTG GATTTTGAATCTAAGAAATTAGGCCCTGAAAATACATCAAAGAACCGGCATCGAAGAGAATGGAGAGATATAAAGCATGAAGCAAATGAGCAGCCTTCTC TTCGGAGTTCTGTGGTTTTTGATGATGATCATGCGGATGATAAAGCTCGTCATAAAGTGAATCGATCGCAATCACCCCGAGGTTCACATAAGAAAAAAAG AAGCCGGCATGACGAGCAGCAGGAATCAAAGAGGGACAGGGAGACAGCTTCCCAAGCAACAATCGATGTTCCTAGGAGACTTCTTCAATTTGCAGTGCGG GATGCTGTTGGAACTTCGAAAGCATCTAGTTCGGTTAAAGAGCCCTCCCTCAAGCGTCTGCGTTCAGTTGTATCTGCGTCCACAGAGGAGGCCCCATTGG CTGATCGCCCTAGGAGGATTCAGTCTATTGCTAGAATTCCAAGTGGTATGGCTACTGTAATTAAGGCGGTGCAGCAAGCAGCTGATGATGTGACGAAGGT AAAACCTTCAAGAAGTGTGTTTGACCGCCTTGGTCGCGATTCAATAGCATTAGAGAATGATGAAGAACGTGCAGGATGCCTTGATGTGATTGTTGAGGAG GAAAAGTATAAATTAAACCAATATAGGGAGCTGACAGATGTGAACTCCTTTCAGAGGAATGCCTACAGGGGACAGGTTGAGCATATGAGTACGGGTGGAA ACAAATTTGGCTTGGCTTCTGACTTCTTGTCCAATGAAGGAGCATTTGATGATGATATGGGTATGGATCATCGTGATGTAGAGGTTATGCAATCTGGCAC CTCTCGTGGGAGCAAGTATGTGCACCCTTCCATGGCTCACCAGAATGTAGCTAGTAAAACTTCAGATGCATTTGTTGCAGCTGTAAATACTTCACGAATG GTGACTAACAGTTCATCAAATTCGAACTCCTGGAGCCTACCTCATCGGCAGAAATTTCAGGAAGCTGCACGAATTGAACAGACTGCTCCCGAGACTGCTA AACCCTCAGGGAAAGTTGGTGTTCAGATTATGAAGGAGAATAACAATCCGGTAGTGGCCGGTAATGGCACCGCTAAATCTGCTACAGACTATAAAGAAGC TCAAAAGACGCTATCAACTCCGCCTGGCTCAGTTTCAGCTGGTCGACCTACTGAAGATGCTGATTCTAGGACCATTTTCGTGAGCAATGTTCATTTTGCT GCCGCCAAGGACAGTCTCTCGCGCCATTTTAACAAGTTCGGTGAAGTGCTTAAGGTGATTATATTAACTGATGCAGCTACCAGACAGCCGAAAGGGTCAG CTTATGTTGAATTCTTGAGGAAAGATTCAGCAGACAGTGCTTTGACTCTTAACGGGACTTCCTTCATGTCCCGGATTCTCAAGGTGGTGAAGAGAAGTGC TGCACCCCAAGAAGAAACTCCTGCAACAACCGTCAGGCCGCGGGTTGCTGCTCCTCGTGGCTCTCCATACTCCATTGCTAGGTTCTCGAGATCCCCATTT GCCAGAGGGGCATTTCGGCCTCGCGGACTGGTTAAACCTGGTTCGAGGAGCATGCAATGGAAGCGAGGGGATTCTTCCGAGGCCGGGAGTCCTGGCAGTG TTCGCTCCCCGGCTGTCCCACGCGGTCTCACTTATGTCAGGACCGAGCCCAAACCCGATGCAACAACATCACCAGCCGCTGCTACTACTACGACTACTAG TTAA
AA sequence Show only first row Show all	>Lus10015696 pacid=23147224 polypeptide=Lus10015696 locus=Lus10015696.g ID=Lus10015696.BGIv1.0 annot-version=v1.0 MSGGNWSGLATYQSSSQFTQPSAGEGVFHETPNFIPFNLRRLSFSGNNPQLCRYNLPPHYSVTDEHHPGLHSIRVLIEEMGSVDRVEDRTFRVNFSDDGV GRLRERVMDKLKEFMGDYTDDTLVEYVIVLLRNGRNKQEAKNELDVFLGDDSDSFVTWLWDHLASSINLYASHSDTDMTKKTGTRSSLGAELVGDESHAV DFESKKLGPENTSKNRHRREWRDIKHEANEQPSLRSSVVFDDDHADDKARHKVNRSQSPRGSHKKKRSRHDEQQESKRDRETASQATIDVPRRLLQFAVR DAVGTSKASSSVKEPSLKRLRSVVSASTEEAPLADRPRRIQSIARIPSGMATVIKAVQQAADDVTKVKPSRSVFDRLGRDSIALENDEERAGCLDVIVEE EKYKLNQYRELTDVNSFQRNAYRGQVEHMSTGGNKFGLASDFLSNEGAFDDDMGMDHRDVEVMQSGTSRGSKYVHPSMAHQNVASKTSDAFVAAVNTSRM VTNSSSNSNSWSLPHRQKFQEAARIEQTAPETAKPSGKVGVQIMKENNNPVVAGNGTAKSATDYKEAQKTLSTPPGSVSAGRPTEDADSRTIFVSNVHFA AAKDSLSRHFNKFGEVLKVIILTDAATRQPKGSAYVEFLRKDSADSALTLNGTSFMSRILKVVKRSAAPQEETPATTVRPRVAAPRGSPYSIARFSRSPF ARGAFRPRGLVKPGSRSMQWKRGDSSEAGSPGSVRSPAVPRGLTYVRTEPKPDATTSPAAATTTTTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	0	1
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	1.0	0.9186
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	1.4	0.8998
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	1.7	0.8971
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	3.2	0.8915
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	4.5	0.8937
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	5.3	0.8880
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	5.5	0.8826
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	6.0	0.8393
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	6.5	0.8907
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	7.9	0.8833

Compare expression of checked genes

Lus10015696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.