Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12610 343 / 4e-118 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G20820 337 / 5e-116 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 325 / 4e-111 Leucine-rich repeat (LRR) family protein (.1) AT2G33170 161 / 1e-44 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G08590 154 / 3e-42 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 153 / 6e-42 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G46330 152 / 2e-41 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G26380 147 / 4e-41 Leucine-rich repeat (LRR) family protein (.1) AT5G07180 149 / 1e-40 ERL2 ERECTA-like 2 (.1) AT5G44700 147 / 8e-40 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037705 [exp] 527 / 0 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 412 / 2e-145 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 407 / 1e-143 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 340 / 4e-117 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 308 / 2e-104 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 226 / 7e-75 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10002293 [exp] 159 / 1e-43 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 158 / 2e-43 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 154 / 4e-42 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064300 [exp] 413 / 7e-146 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 407 / 1e-143 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 343 / 3e-118 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 339 / 1e-116 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.016G029900 [exp] 155 / 1e-42 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G188700 [exp] 153 / 5e-42 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G065400 [exp] 151 / 4e-41 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G008375 [exp] 151 / 4e-41 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.011G104600 [exp] 151 / 4e-41 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.008G033900 [exp] 150 / 4e-41 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10015700 pacid=23147253 polypeptide=Lus10015700 locus=Lus10015700.g ID=Lus10015700.BGIv1.0 annot-version=v1.0 ATGACCGGCACAATCTCCCCTGCCGTATGCAACCTCGACCGTCTCACCACGCTCATCATCGCCGACTGGAAGGCCATCTCCGGTCCAATCCCGGTCTGCG TCTCCTCCCTCACCAACCTCCGCGTCCTCGACCTCGTCGGCAACTCCTTCTCCGGCCAGATCCCTCCCCAAATCGGAAACCTCAACCGCCTCGCCGTCCT CAACCTCGCCGACAACCAGATCTCCGGCCAAATCCCTACTTCCTTCTCAAAACTGCAGAATCTAAGACACCTCGACTTGAGCGGGAACCAAATCTCCGGC CAGATCCCGTCCGATTTCGGGAATTTGAAAATGGTGAGCAGAGCTCTGCTTAACCGGAACCGACTCTGCGGTTCGATTCCCGACTCAATTTCGAAAATGT CCAGGCTGGCGGATTTGGATCTTTCCACGAACCGGTTATCCGGTTCGCTTCCCGGTTGGTTCGGTGACTTACCGGTTCTTTCCACGCTGAATCTGGACAG TAACCAAATCGGCGGCATGATTCCAGCGAAGCTGTTGGGGAGCAAGGGATTGGGGATTTTGAATCTGAGCAGGAATGCTTTGGAAGGGAGCATACCGGAC GTTTTCGGGCCGAAGAGCTACTTCATGGTGTTGGATTTGTCGTATAACAATCTGAAGGGGAGTATTCCGAGGACGCTCTCGTCGGCGGCGTACGTTGGAC ATGTGGATTTGAGTCATAACCATTTGTGCGGGCCGATTCCGGTAGGGGAGCCGTTCGAGCGGCTTGATACGTCGTCGTTTAGCTTCAACGATTGTTTGTG CGGGAATCCGTTAAGGACGTGTTAA
AA sequence Show only first row Show all	>Lus10015700 pacid=23147253 polypeptide=Lus10015700 locus=Lus10015700.g ID=Lus10015700.BGIv1.0 annot-version=v1.0 MTGTISPAVCNLDRLTTLIIADWKAISGPIPVCVSSLTNLRVLDLVGNSFSGQIPPQIGNLNRLAVLNLADNQISGQIPTSFSKLQNLRHLDLSGNQISG QIPSDFGNLKMVSRALLNRNRLCGSIPDSISKMSRLADLDLSTNRLSGSLPGWFGDLPVLSTLNLDSNQIGGMIPAKLLGSKGLGILNLSRNALEGSIPD VFGPKSYFMVLDLSYNNLKGSIPRTLSSAAYVGHVDLSHNHLCGPIPVGEPFERLDTSSFSFNDCLCGNPLRTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	0	1
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	4.9	0.9103
AT5G53880			unknown protein		Lus10000796 [exp]	6.0	0.8817
AT3G49720			unknown protein		Lus10007228 [exp]	6.0	0.8911
AT5G28150			Plant protein of unknown funct...		Lus10001787 [exp]	6.9	0.8799
AT3G17130			Plant invertase/pectin methyle...		Lus10037791 [exp]	6.9	0.8598
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	6.9	0.8730
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	11.8	0.8718
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	12.8	0.8716
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	14.5	0.8223
AT1G33260			Protein kinase superfamily pro...		Lus10016382 [exp]	17.0	0.8765

Compare expression of checked genes

Lus10015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.